Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01838 ATGTCTCCGATCCAAAACCCTCCTCAAACCCTAGAAGACGTGTTTGCTCGTTTATGCGTCTTCGGTTCTCCTTTCAATGACCCACCTTTTAATTTCGTGGCCAATGGGTCTTCTGGCATCACCGGTGCCTCAAAGATTTCATCTTGTAACGGTTGGGGAAGTGGGGTAATTCCCACCCCTCAAAGTTCCAATCTTTGTAACCCTTACGATGATGGGTTTCTCCATTGCGATCCTTTGGCGAGGCAAAGAGAAAACCCCGCATTGAGACGCCTCCGTTGGTTCAGTGATATGCGTGGGATGGTTCTGTTGCTGGCTAAGGATCATCACGAGAGTAGGACTTTGCAGGAGACTTTGAAAATGTTGACGAGAGAGGAGTTTTCTATCATCTTTTTGGAGCTCATAAGTCACGTGCCCGAGTTGATGGTTGACTCCTTTGGGAACTATGTTGTTCAGAGGATGGTGGAAATTTGCAGTGAGGAGCAGCTGAATCAGATCGTTTTAAGTGTCACTCAGTATAACTTTCAGTTAGTCAAAATATGTCTTATTTCTCATGGAATCCGTGCGGTTGAGAAATTATTGGAGCATCTTACCACCCAGGAGCAACGAAGTCGTGTTATATCAGCTCTTAGCCCCGGTGCTGCTGTGTTGGCTAAGGATGTGAATGGTCATCGTGCGCTTCTGCATTGTCTAAAACATTTTTCTTGTGAAGACAATAAGCATCTTCTCAATATGGTAGCAATGAAGTGCTTTTGGATCGCAATAGATAAGACTGGGTGTTGTGTGCTGCAGCAGTGCCTTAACAATGCACAAGGAGGAACAAAAAAGAATATGATTGATGCTATCTTATTTAATGCTTCAGTTCTAGCAGAAGACCGATACGGCAATTATGTTGTGCAACATTTATTGTCCCTGAAAATACCAGGACTTGCAGAAAGACTACTGAGACAGCTTGAAGGAAAATTTTTCTATCTTTCATGCAACAAATATGGGAGTAATGTAGTGGAGAAGTTCTTTCTAGACTCAGGTGGACTGTGTTCAGCATTTATTATTTTTGAGCTGCTACATAATCCAAATGTTCGAATGCTGCTTGTGGATCCTTATGGAAATTATGTCATCAAATCAGCACTGTTGGTGTCTAAGGGTGGTGTTCGGAATGCCTTGGAGCGACTGATCAAACTAAATTCCATGATAATGCAGAGCAACATGTATGGCAAAAAGTTACTTGCTTGGTTTCACAGGAGCAAAAATATAAACATGGATTACAGTGACTTTGTATAG 1278 0.4249 MSPIQNPPQTLEDVFARLCVFGSPFNDPPFNFVANGSSGITGASKISSCNGWGSGVIPTPQSSNLCNPYDDGFLHCDPLARQRENPALRRLRWFSDMRGMVLLLAKDHHESRTLQETLKMLTREEFSIIFLELISHVPELMVDSFGNYVVQRMVEICSEEQLNQIVLSVTQYNFQLVKICLISHGIRAVEKLLEHLTTQEQRSRVISALSPGAAVLAKDVNGHRALLHCLKHFSCEDNKHLLNMVAMKCFWIAIDKTGCCVLQQCLNNAQGGTKKNMIDAILFNASVLAEDRYGNYVVQHLLSLKIPGLAERLLRQLEGKFFYLSCNKYGSNVVEKFFLDSGGLCSAFIIFELLHNPNVRMLLVDPYGNYVIKSALLVSKGGVRNALERLIKLNSMIMQSNMYGKKLLAWFHRSKNINMDYSDFV 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01838 425 SMART pum_5 132 167 IPR001313 GO:0003723
Cca03g01838 425 SMART pum_5 208 243 IPR001313 GO:0003723
Cca03g01838 425 SMART pum_5 244 279 IPR001313 GO:0003723
Cca03g01838 425 SMART pum_5 171 207 IPR001313 GO:0003723
Cca03g01838 425 SMART pum_5 354 389 IPR001313 GO:0003723
Cca03g01838 425 SMART pum_5 316 352 IPR001313 GO:0003723
Cca03g01838 425 SMART pum_5 280 315 IPR001313 GO:0003723
Cca03g01838 425 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 85 410 - -
Cca03g01838 425 Gene3D - 83 420 IPR011989 -
Cca03g01838 425 ProSiteProfiles Pumilio RNA-binding repeat profile. 132 168 IPR001313 GO:0003723
Cca03g01838 425 ProSiteProfiles Pumilio RNA-binding repeat profile. 280 315 IPR001313 GO:0003723
Cca03g01838 425 Pfam Pumilio-family RNA binding repeat 321 338 IPR001313 GO:0003723
Cca03g01838 425 Pfam Pumilio-family RNA binding repeat 361 372 IPR001313 GO:0003723
Cca03g01838 425 Pfam Pumilio-family RNA binding repeat 216 243 IPR001313 GO:0003723
Cca03g01838 425 Pfam Pumilio-family RNA binding repeat 101 134 IPR001313 GO:0003723
Cca03g01838 425 Pfam Pumilio-family RNA binding repeat 288 302 IPR001313 GO:0003723
Cca03g01838 425 Pfam Pumilio-family RNA binding repeat 249 282 IPR001313 GO:0003723
Cca03g01838 425 Pfam Pumilio-family RNA binding repeat 184 209 IPR001313 GO:0003723
Cca03g01838 425 Pfam Pumilio-family RNA binding repeat 136 166 IPR001313 GO:0003723
Cca03g01838 425 PANTHER PUMILIO HOMOLOG 15 85 410 - -
Cca03g01838 425 SUPERFAMILY ARM repeat 94 410 IPR016024 -
Cca03g01838 425 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 75 415 IPR033133 GO:0003723
Cca03g01838 425 ProSiteProfiles Pumilio RNA-binding repeat profile. 352 392 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01838 Cca-Chr3 37725866 37729208 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01838 - - gmx:100795545 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01838 03 37725866 37729208 Cca03g01838 03 37725866 37729208 ECH