Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01835 ATGAAGTCCCAAATGAAGAAAAAAAGAGTGCCACCCATTCCCAACACTTGTTGCAACACCAGCAATCAGATTTGCATCAACCCTTGTTGTTTCTTCTGCAGCATGAAAGAACCAGATGCATCTGAGAGAAGGGCTGGGATAGTGGCCTGCTTCAGAGAAATGCCTGATGGAGACACTCATGAACACGTGTTGGTGCTTAGTGGACTATGGCACATCGCAATGAGCCAACCCAACGACCCAGAGTTCCCATCCCTCGGCGTATTCAAGTGCATGGCAAGCCTAATCCACAAAGGCATAAGCGACACCCACTGGCTTCTCACAAACCAAAACATATACATACCTTACTACGCTGCTCACATTATTGGCTCATACACAATGAACAAGGAGGAGTTTGCACAACTAGCCGTGCAATCAGGTGTGGTACCCCCTTTGGTGGACCTTCTCAGAGGCAAGATCAGTTGGGTTGAGCAAAGAGTCGCTGTTCGAGCACTTGGTCACTTAGCCAGTTACAAAAGCACGTTTGAATCAGTAGCATATCACGAGCAAGAGGTGGTGAACTTGGCCTTGAACTTGGCTTCCACCTGTTTAGAAATTGTCTATGTTGACTTCATTGCTGTGAAGGAAAACAAAAGAGTGGAGTACCATAGGAACTTGATTACTAGAGGGGTTGGGGATTTGGAGATGGAGAATCGCAAGGCAGAGGAATGGGCTAGCCAGCTTCAATGTTGGTCTCTTTATCTTCTCAATTGCTTTGCTTGCAAAGATAGGTCTCTGGATCTCATCTGCAAAAAGGTGTTTCTCAAGGACTTGTGTGATATATGGGGTGGCTTCATAAACCACACGTCACCAGGTGGGGTTGGACTCATTAGAATCTTGTGTTATAGTAAAGTTGGAAGGAAAAACATTTCTGAATTACCGAAAGTTGTGAACACTCTAGGTAACCTTTCAAGATCTTCAGATGATTGGCAGTATATAGGCATCGATTGTCTTCTTCTGCTTCTCAAGGATCCTGATACTAGGTACAAAGTTCTTGATGTTGCTGCTTCGTACCTTATTGATTTGATTGAACTTACAAGCCTTGGAGATAAATCCAACGTGGGTGATACCATCATAAGGGTTCTCCTTAGTGTGAAACCTAACAGACAAAAGGTTGGAGCAGCAATGTTGCAAGAGGTGGTGGATAGGAGGAACAAGGAGAAGCTACTGTCGGAGGAAAAAGTAGAGGAAACAAGGGTTTTGGTGGGTTTGATAAAGCAACAAGGGAATCACATGTTCAGGTTGGGAAAGGTGGAAGAGGCTTTGTTGAAATATTCTGAAGCACTTGGTGTTTGTCCCTTGAGGTTTAGAAAAGAAAGAATGGTGATTTATAGTAGCCAAGCACAGTGTCATATTCTGCTCAAGAACGCGGATTCAGCTATCAGTGACTCAACGCGTGCTCTTTGCCTTTCCAACCCTGCAAACACACATGGAAAAAGCCTTTGGAGAAGGTCACAAGCATATGACATGAAAGGAATGGCCAAAGAGAGCCTCATGGACTGCATAATGTTCATCAACAGTTGCATCAAGTCGGGGGATAGCATGCGTGTCAAGATTCCTTACCACGCTGCGCGCATGATCAGCAAACACATGGACGCCACGTGGCTCTTTGCCACTGCTCGCTTGAAGGTGGAACAAATACAAGAGTTGAACCATGAAGAGCAACCACGTGATCATAAGATTATGGTGGAGACGAGAAACAGACTCATACACGGTCTGTCAACCATTATTGAGGAACCTTTTCACGCAAAAGAAGCTGATAGGAGAAAGATGGAAAGGGCGAGAAGGAGATTCAAGAAGGGTGTTGTGGCTCGATCAACGTAA 1860 0.45 MKSQMKKKRVPPIPNTCCNTSNQICINPCCFFCSMKEPDASERRAGIVACFREMPDGDTHEHVLVLSGLWHIAMSQPNDPEFPSLGVFKCMASLIHKGISDTHWLLTNQNIYIPYYAAHIIGSYTMNKEEFAQLAVQSGVVPPLVDLLRGKISWVEQRVAVRALGHLASYKSTFESVAYHEQEVVNLALNLASTCLEIVYVDFIAVKENKRVEYHRNLITRGVGDLEMENRKAEEWASQLQCWSLYLLNCFACKDRSLDLICKKVFLKDLCDIWGGFINHTSPGGVGLIRILCYSKVGRKNISELPKVVNTLGNLSRSSDDWQYIGIDCLLLLLKDPDTRYKVLDVAASYLIDLIELTSLGDKSNVGDTIIRVLLSVKPNRQKVGAAMLQEVVDRRNKEKLLSEEKVEETRVLVGLIKQQGNHMFRLGKVEEALLKYSEALGVCPLRFRKERMVIYSSQAQCHILLKNADSAISDSTRALCLSNPANTHGKSLWRRSQAYDMKGMAKESLMDCIMFINSCIKSGDSMRVKIPYHAARMISKHMDATWLFATARLKVEQIQELNHEEQPRDHKIMVETRNRLIHGLSTIIEEPFHAKEADRRKMERARRRFKKGVVARST 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01835 619 PANTHER ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN 6 608 - -
Cca03g01835 619 SUPERFAMILY ARM repeat 105 400 IPR016024 -
Cca03g01835 619 SUPERFAMILY TPR-like 417 515 IPR011990 GO:0005515
Cca03g01835 619 SMART arm_5 128 169 IPR000225 GO:0005515
Cca03g01835 619 PANTHER ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN 6 608 - -
Cca03g01835 619 Gene3D Tetratricopeptide repeat domain 420 530 IPR011990 GO:0005515
Cca03g01835 619 Gene3D - 104 419 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01835 Cca-Chr3 37699754 37702319 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01835 - - gmx:100777591 1058.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01835 03 37699754 37702319 Cca03g01835 03 37699754 37702319 ECH