Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01825 ATGAGAGATTCCTCTAGCCCATGGAACTCTGATGAAATCCGCCGAGATCTACAAACCGCCCTTGGCACTGCTAAATGGCAGCTAGAGGAATTTGAACGGGCAGTTAGGACAAGTTATAACAAAGTTTCAAGTGAGGATGCGAAAAATAGGCACCGAGATTTTATTGATGCCATTGGTGGCAAAATTACCAATGTTGAACATTTGTTAAAAGAATCTGTTCATTCAAGTAGCAAGGCATCTCTACCTTGGACACGTCTCGACGAAGGAGAACGAGATGAGCTTGCATCGTTTCTTTCGGGAACACCAACTGCTGCTGAGAAAAGCGCTATTGAATGTGTCAGCGCAGATGGTGAAAATCTGCAGTTAAGTGATAAAGATTCGTTCAGTAATTGTTCAAGCAATTTGCATGTTTCATCTGGGTGGGGTTCGTCCGAAGCATTGCCAGAGAAATTGCATGGCCATCGCAGGGCTGCTAGTGCTGATGCTGATATTAGTTCTTGGAAAATCAATGTTGCTGACAATGTGCAACAATCAACTTCCTCCAATGGCTCTTCTGGTCCTGTGCATAAGGTAGCCAGTCTTTCTGGATTTTTTGGTTCCATGGAAACTATCTCTAAGTTGAAGTGGTCTAAGAATGGTTATAGAAAGCTTAAAGCAGTAAATCATTGTGAAGAAATGGATAACACACTACTACCATCAGCTGGAATGAATGGGGGCCTCAATGCATACTTTGAAAGAAGTAAGAGTTGCCTTGATAATTGTGATGAATGTTATGACAAACAACTCCGCGGGTGGTACGGGGCCTTGCAAAGGCAGCTTCAAAGATCTCAGTACCAAATGCAATACAATCGGCATGTTCAAATAACTGTCTGGGCTGTTATTCTCCTTTGCTTGATTGTTTTAATTGCTTTTTGCACGATGTAG 924 0.4242 MRDSSSPWNSDEIRRDLQTALGTAKWQLEEFERAVRTSYNKVSSEDAKNRHRDFIDAIGGKITNVEHLLKESVHSSSKASLPWTRLDEGERDELASFLSGTPTAAEKSAIECVSADGENLQLSDKDSFSNCSSNLHVSSGWGSSEALPEKLHGHRRAASADADISSWKINVADNVQQSTSSNGSSGPVHKVASLSGFFGSMETISKLKWSKNGYRKLKAVNHCEEMDNTLLPSAGMNGGLNAYFERSKSCLDNCDECYDKQLRGWYGALQRQLQRSQYQMQYNRHVQITVWAVILLCLIVLIAFCTM 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01825 307 Pfam Syntaxin 6, N-terminal 6 65 IPR015260 GO:0016020|GO:0048193
Cca03g01825 307 Gene3D - 1 97 - -
Cca03g01825 307 PANTHER EXPRESSED PROTEIN 2 306 - -
Cca03g01825 307 PANTHER OS05G0443700 PROTEIN 2 306 - -
Cca03g01825 307 SUPERFAMILY t-snare proteins 9 70 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01825 Cca-Chr3 37492369 37495214 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01825 - - gmx:100795867 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01825 03 37492369 37495214 Cca03g01825 03 37492369 37495214 ECH