Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01816 ATGAAGGAAGCGGAGGAGCAACTATGCGAGGCGGCAAGGAAGGGTGACACTGACAGAGTGAAGGCTCTTATAAACTCCGGCGCCGACGTCACATATTTCGACGGCGAGGGCCTCAATCCTCTGATGCACGCCGCAAAGCTCGGCCATGCACCCGTCCTCTCCCTCCTCCTCTCCGCCGGCGCCCCCTGGAACGCTCTTTCTCCCTCCAACCTCTCCGCCGGCGACTACGCCATGCAAGAAGCCCACAGCGAAGCCTTCGAGCTTCTCCTCAACGCCGGGATTCAGGCCGAACTTATCCTGGGAACAATCGCCAGGAAGGATCATAAGAACGGCGATTCCGGTGACGATTATTTGGAAGACAGGGTGAGTTTCAGCGAAGACAAGCTTATGGACGCTGATAGCAAAGCTGTGATGATGGCGTGGGAGAAGCCGTTGATGGAGGCACATGCCAAAGCTGTTTGTTCCGGTGGTGCTCACGTGCTCAATATTGGGTTCGGAATGGGTCTCGTGGATTCGGCCATTCAGCAATATTCACCTGCCTCACACACCATCGTTGAGGCTCATCCGGAGGTCTATCAACGCATGCTTCGCTCCGGTTGGGGTCAGAAGGAAAATGTCAAGATTGTTTTTGGCCGCTGGCAAGATGTTTTGTCTCAGCTTCAAACATATGATGGAATATTCTTCGATACCTACGGGGAGTACTATGACGATCTGAGGGAGTTCCACCAGCATCTCCCAACACTTTTGAAGCCTGGTGGAATCTACTCTTTCTTCAATGGCCTTTGTGGTAGTAATGCATTTTTCCATGTTGTTTACTGCCATTTGGTATCTCTTGAGCTTGAGAATTTGGGGTATTCCACGCAATTAATTCCGTTGCCTGTTAAGGATTGTTTGGGAGAACAAGTATGGGAAGGTGTGAAACAAAAATATTGGCAGCTTGATACGTACTACCTTCCTGTCTGTCAGTCTGTAGAGGAACCTGAGTGA 987 0.5117 MKEAEEQLCEAARKGDTDRVKALINSGADVTYFDGEGLNPLMHAAKLGHAPVLSLLLSAGAPWNALSPSNLSAGDYAMQEAHSEAFELLLNAGIQAELILGTIARKDHKNGDSGDDYLEDRVSFSEDKLMDADSKAVMMAWEKPLMEAHAKAVCSGGAHVLNIGFGMGLVDSAIQQYSPASHTIVEAHPEVYQRMLRSGWGQKENVKIVFGRWQDVLSQLQTYDGIFFDTYGEYYDDLREFHQHLPTLLKPGGIYSFFNGLCGSNAFFHVVYCHLVSLELENLGYSTQLIPLPVKDCLGEQVWEGVKQKYWQLDTYYLPVCQSVEEPE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01816 328 PANTHER GUANIDINOACETATE N-METHYLTRANSFERASE 1 323 - -
Cca03g01816 328 Pfam Ankyrin repeats (3 copies) 8 95 IPR002110 GO:0005515
Cca03g01816 328 ProSiteProfiles Ankyrin repeat profile. 3 35 IPR002110 GO:0005515
Cca03g01816 328 PIRSF Rmt2 1 116 IPR017408 GO:0016274
Cca03g01816 328 PIRSF Rmt2 106 325 IPR017408 GO:0016274
Cca03g01816 328 CDD AdoMet_MTases 160 255 - -
Cca03g01816 328 ProSiteProfiles Arginine and arginine-like N-methyltransferase domain profile. 110 328 IPR026480 -
Cca03g01816 328 SUPERFAMILY Ankyrin repeat 8 95 IPR036770 -
Cca03g01816 328 SMART ANK_2a 3 32 IPR002110 GO:0005515
Cca03g01816 328 SMART ANK_2a 69 98 IPR002110 GO:0005515
Cca03g01816 328 SMART ANK_2a 36 65 IPR002110 GO:0005515
Cca03g01816 328 Gene3D Vaccinia Virus protein VP39 109 323 IPR029063 -
Cca03g01816 328 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 122 321 IPR029063 -
Cca03g01816 328 ProSiteProfiles Ankyrin repeat region circular profile. 36 61 - -
Cca03g01816 328 Gene3D - 1 108 IPR036770 -
Cca03g01816 328 ProSiteProfiles Ankyrin repeat profile. 36 68 IPR002110 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01816 K18477 - gmx:100527621 622.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01816 03 37381785 37384345 Cca03g01816 03 37381785 37384345 ECH