Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01814 ATGGACCCATCTATAGTGAAGCTTTTGGAAGATGATGAGGATGAAACTATGCATTCAGGGGCAGATGTGGAAGCATTCCAGGCTGCATTAAATAGAGACATTGGAGGAGATGCATCAACTTCTCAGCTGTCTGGTTCAGACACAGGAAGCAATAATTCATTGAGTCAGTCATTACCAAAGTGGCCAACTTCTACCCATGACAACCAAACTGACTGTCAAAATCAAGAGCCTAAAGTTGTGCCGCAGCAAGAGCAACAACATTCTTCGGAAATGGAGTTGAAGCAACAACCTCTTGTTGAACAACTACAGAATGTTGCTTCTCAGGATGCCAATAATCTCCCTTCATCTCAGAAACAATCTCAAGATGAAAGTGACCAGGACCATACTGGACAAGCTCCCCACCAAAATTCTCAAACTAATGGAGTTCAGAATTCTGAAAAAGATCCTGTCTTTAACCATGAGGTAGTCAACACTCATAATCCCAATCATGAATCTCAGTATGCAAAGCTGCAGCAGATGAGTAATCAACAGGCTACTGTCAATGAGCAGCCTAGCAGCCAGGTCAATCGGAATAAACAGGTACCGTTTGCCATGTTGCTCCCTATGTTGATTCCCCAACTTGCCAAAGACAGAGCCATGCAACTTCAAACTTTATTTAATAAATTGAAGAAAGATGAAATACCCAAAGATCATTTTGTGCGGCTTATGAAAGGTATTGTTGGGGATCAGATGCTTAGATTGGCTTTAACAAAAGTTCAATTACAGACAAGATCCAACCCAGGGCCTTCTGGGCAGCAGCATCCTGTGAGGATGCCAAATGTTAATTCAGGTGCAACAAAATTTAATGATCCCCATGCATTGGCACAGCTGCATCAGAGAAGTATGAATGCTGTTGCAGATCAATCTCATAATACTTCAGCTGTCCAAATGAAGAATGAACCAACTTATCCAACTGTGGACATTAATGCTAAAAAATCTCGGGAACTGGATGTTCAAGTAGAATCTCAAGGAGTGCCACCAAATCAGTTGCCATCATCCAGTTCTAATGCTGTTAGTCAAGAAACTGAAAGATCCTCACTTCACATACAAGGCCTTAATAAGGAGCAACAACAGCATCTACATTTCCCTTCAGCATATGGTAGCAGTGGTGGTAATTATAGCCCTTTTTTGGGCTCAACCAGTAGTTCCACATCATCTCTAAGACCACAACATCATGTTCCACATCAAAGCATCAGTTCAAATCAATTAGGTGGGGTAACACAGGGTTTGATTGGTATGACAAAATTTGATCAGCAAAATTCTTTCAATGAGCCCAAGAGAATGCCCGGTGGATATGTGTCTCCCATGGGTAGCAGTGCCAATCAAGGCACTCTAAAGGAGGAGTTTTCAAGAGGCCTTCCAGCATCCACAAGTATGCCACATACGACATCTAGCTCGCAGCCTCTCAACTCTGCATCCTCTTCTGTATCTCAATTGGACCATGGTGCCACTTTAAGCTCTCAGATCCCGTCAAACACATCTGGTATACATGCAAGGACTCCTCTGAGAAAGCCTTCTCCAGGCCAGAAGAAACCAATTGAAGCACTTGGTTCTTCACCTCCTCCTCCAAGTAAGAAACAAAAAGTGTCTGGGGCATCTCTGGAACCGAGCATTGAACAGCTTAATGATGTCACGGCTGTTAGTGGTGTTGATCTTAGGGAGGAGGAAGAACAATTATTTTCTGGGTCCAAGGAGGATAGTCGAGTTTCAGAAGCTTCTCGAAGAGTTGTGCAAGAAGAGGAGGAAAGTCTGATTTTGCAGAAAGCTCCATTGCAGAGAAAATTGATTGAGATTATAACTGAGTGTGGCTTGAAGGGTATGAGTAATGATTTGGAGAAATGCTTGTCACTGTGTGTGGAAGAAAGAATGCGTGGAGTAATAAGTAACATGATTAGAATGTCAAAACAGCGGGTTGATTTGGAGAAGACAAGACATCAGACTGTTGTCACTTCAGATGTTCGGCAGCAAATCATGACAATGAATAGGAAGGCAAGGGAAGAGTGGGAGAAAAAACAAGCAGAAACAGAGAAGCTCCGGAAACAAAATGATGTTGAAGGTAATGCTGGAATGGATGGTGACAAGGAGAAGGATGATGGTAGAATGAAATCAACAAAGGTGAACAAAGAAGTGGATGACAAGATGAGGACAAATGCTGCAAATGTTGCCGCCCGGGCTGCTGTTGGGGGAGATGACATGCTGTCCAAGTGGCAACTTATGGCCGAGCAAGCCAGACAGAAACGTGAAGGGGGGATGGATGCTTCATCTGGTTCTCAGCCAGCCAAAGATGTGGGGCGCAAATCTTCATCGACATCAGGAAGGAGTACAAAAGATAATCAGGCAAGGGAGAAAAAAGGTCCAACTTCTATCGCCGGAGCCGCTAAAAAGCTTGGGAGAAATCATTCCACTACACCTCAAACCAGTGTAGCTCGAAGCATCTCTATCAAGGACGTGATTGCAGTCCTGGAGAGGGAACCGCAGATGTCCAAATCATCACTCATATATAGACTGTACGAGAGAATTCATTCTGACACCTCTACTGAATAA 2583 0.4355 MDPSIVKLLEDDEDETMHSGADVEAFQAALNRDIGGDASTSQLSGSDTGSNNSLSQSLPKWPTSTHDNQTDCQNQEPKVVPQQEQQHSSEMELKQQPLVEQLQNVASQDANNLPSSQKQSQDESDQDHTGQAPHQNSQTNGVQNSEKDPVFNHEVVNTHNPNHESQYAKLQQMSNQQATVNEQPSSQVNRNKQVPFAMLLPMLIPQLAKDRAMQLQTLFNKLKKDEIPKDHFVRLMKGIVGDQMLRLALTKVQLQTRSNPGPSGQQHPVRMPNVNSGATKFNDPHALAQLHQRSMNAVADQSHNTSAVQMKNEPTYPTVDINAKKSRELDVQVESQGVPPNQLPSSSSNAVSQETERSSLHIQGLNKEQQQHLHFPSAYGSSGGNYSPFLGSTSSSTSSLRPQHHVPHQSISSNQLGGVTQGLIGMTKFDQQNSFNEPKRMPGGYVSPMGSSANQGTLKEEFSRGLPASTSMPHTTSSSQPLNSASSSVSQLDHGATLSSQIPSNTSGIHARTPLRKPSPGQKKPIEALGSSPPPPSKKQKVSGASLEPSIEQLNDVTAVSGVDLREEEEQLFSGSKEDSRVSEASRRVVQEEEESLILQKAPLQRKLIEIITECGLKGMSNDLEKCLSLCVEERMRGVISNMIRMSKQRVDLEKTRHQTVVTSDVRQQIMTMNRKAREEWEKKQAETEKLRKQNDVEGNAGMDGDKEKDDGRMKSTKVNKEVDDKMRTNAANVAARAAVGGDDMLSKWQLMAEQARQKREGGMDASSGSQPAKDVGRKSSSTSGRSTKDNQAREKKGPTSIAGAAKKLGRNHSTTPQTSVARSISIKDVIAVLEREPQMSKSSLIYRLYERIHSDTSTE 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01814 860 Gene3D Histone, subunit A 599 644 IPR009072 GO:0046982
Cca03g01814 860 MobiDBLite consensus disorder prediction 296 316 - -
Cca03g01814 860 MobiDBLite consensus disorder prediction 468 512 - -
Cca03g01814 860 MobiDBLite consensus disorder prediction 433 554 - -
Cca03g01814 860 MobiDBLite consensus disorder prediction 677 723 - -
Cca03g01814 860 MobiDBLite consensus disorder prediction 296 318 - -
Cca03g01814 860 MobiDBLite consensus disorder prediction 773 788 - -
Cca03g01814 860 ProSiteProfiles RST domain profile. 187 258 IPR022003 -
Cca03g01814 860 MobiDBLite consensus disorder prediction 331 360 - -
Cca03g01814 860 MobiDBLite consensus disorder prediction 33 92 - -
Cca03g01814 860 MobiDBLite consensus disorder prediction 109 146 - -
Cca03g01814 860 MobiDBLite consensus disorder prediction 536 554 - -
Cca03g01814 860 MobiDBLite consensus disorder prediction 34 92 - -
Cca03g01814 860 Pfam RCD1-SRO-TAF4 (RST) plant domain 190 253 IPR022003 -
Cca03g01814 860 CDD TAF4 550 848 IPR007900 GO:0005669|GO:0006352
Cca03g01814 860 MobiDBLite consensus disorder prediction 811 825 - -
Cca03g01814 860 MobiDBLite consensus disorder prediction 130 146 - -
Cca03g01814 860 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 40 854 IPR045144 GO:0005669|GO:0006352
Cca03g01814 860 MobiDBLite consensus disorder prediction 335 360 - -
Cca03g01814 860 PANTHER IP01149P-RELATED 40 854 - -
Cca03g01814 860 MobiDBLite consensus disorder prediction 754 825 - -
Cca03g01814 860 MobiDBLite consensus disorder prediction 386 416 - -
Cca03g01814 860 Pfam Transcription initiation factor TFIID component TAF4 family 554 849 IPR007900 GO:0005669|GO:0006352
Cca03g01814 860 Coils Coil 674 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01814 Cca-Chr3 37355336 37367084 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01814 K03129 - gmx:100798514 1411.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01814 03 37355336 37367084 Cca03g01814 03 37355336 37367084 ECH