Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01809 ATGTCGAATCGATCCGGTCAAGGTAGGCAAGacaaaaacaaaaacaacaacaacaacaacaacaacaacaacGACGACAAGGGTTTCAACAATAGCCAAAAGAAATTCGTCCCCAAAAATCCCAATCCCACCCTCTCAACCTCCCTCAGACAACCGTCCAAAGCCCTAAACAGAGCCCACAATGGTAATTTCGTCAATTACTTACCACACGACGAGGCCGTCGCGGCGGGTCTCGGCGCCGAGGACGGAGCATTGGATCCACTTGAATCTCAGAGAGTCGTGGATCTTCTCAACTCACACTTGTCACGCTTGCTCAAGTTGAAACCCAAGGATTTCTGGAGACAAGTGGCTACTGATACCTCCCTGCATGAGTTTTTGGACAGTTTTTTGCAATTCAGGAGCAGGTGGTATGATTTCCCTCATCGCGGGGTGAGAGGGATTGTTGCCGGTGTTATTGTTGGAGAGCTTGATTTGAGTCGCCGAGTTTTCATGGTATTGTTTCGCATTTCTTCGAATAAAGACCCTGGCGCTCGACCTGCGGATTCCCTCAGTTTGAGAGACCATGGAGTTCTTTTGCAGGAGAAGAAGTTGCTTGACTTGCCAAAGTTGTTAGATATATGTGCCATATACTATCATGAAAATGAAGAATTGACAAGGTCACTGGTTAGAAATGCTTTGAGTGCTCAGCCTCAGATCCATAATAATCTGACTGCAGTAATTTCCCATTTTCTAGGAATTGTCAGCACAATGCATGAACGTTGCAGTTCATCATTAGAGGTCTTATTTTCTTCTGGAAATCTTGATCACCACAATGCTTCTTTTCTTCAAGCTGATCTGCTGGAGGTGATGGACTTTATAAATGATGCAATTGTTTCAATGGATTCTTTTGTTAGTGCATATGAACCGTCAGCTGTGTTCTTCTCTTGCCCGGTTGAAATGAGTTATGGGAATGAGGAATTGCTTAGCCTCCTTGCCAGATTGCATGATTCGCTAATTCCATCATTGCAAAAGGGATTCCGTATGATTTTTGCTGACAAACAAGATGGCACAGTATCTAATATCTTAATAAGTTTAAAGATGTTAAGAATGAGATTAATAAAGTTTGGTTGGCAACTATTGCACTTGTGCTATCTAAGCGATGAAGTGTTCAGAGATAGCATCCCTCTTCCAGCTGCCACAAAGATGTTTCCTGCCAATGTAGAGGACCCATTCATCAGAGCAGATATTCTGGTTCAAACATTTAGAGAGATCAATTCAGTATCTTTACAATTTCAGGAAATGCATCAGAAGGAAACATTTCTTCAAGATGTTGAAAGAAATTTCAATATACTAAGCAGGGTTGATAGACTAAAGGATAGTGGATGGATTTTCATTGATGATGAACAGCTTCAATATATATCTGGGATGTTGAGTTCTGTGAAGGAGATCTATAAACAGCCATATTCTGCAGCAAGTTCTGTGCCAAACCAAACATTGCTGACGGATGAAGATGCTGCAATTACAGAGTCAAACATCAGTCAAATTAGGGACCTGTTCCCTGATTATGGTAGAGGGTTTTTAGCTGCGTGTCTTGAGGTCTATGACCAGAATCCAGAAGAGGTTATTCAAAGAATTTTAGAGGGTACCCTTCATGAGGATCTGCAGAAGCTGGACACCTCGCTAGAGACATTGCCACTGGCCAAGTCTACCACTGTGGGTGGGAATGATAAAGGAAAAGGTAAATTAATTGATTCTATGTCAGCATCCTCAAATCCAGAAGTTGTTAGGGGGAAGCAAAAGACAGAAGTGCCTTTGATGTCATCCTCTGCTTCACTAGGAAAATTTGTTAGGAAATCTAAAGCTGATCGTCCTGATGTCAGTATTCTGGATAATAAGGATGAGAAAGATGCATCAAAAACTGCTGCTATGCTTTTACAATATGAATATGAAGATGAGTATGATGACTCTTTTGATGATTTGGGTCTAAGTGTAGCAGACTCTGGGGTAGAAGAAAACGAGATACTAGGTGACACAATAAACGCCAAGTCAGGGAAATCATGGGCAACAGAGACTGGAAATTCAGTCAAAAATGCTCCTGATTCAAAATGGGGCTCTAGGAAAAAGCCGCAGTACTATGTCAAGGATGGTAAGAATTACAGCTACAAAGTGGCTGGTGCAGTAGCAGTGGCAAACTCCGATGAAGCTTCGCTAGTAAACGAAGCTCAGAAAGAATTAATACATGGCCTTGGACGTGGCGGCAACCTTCCTCTTGGTGCAGTAAAGAAGTTGACAGATTCCTACAAGGAGGATGATAACCAATTCCAGGTTTCTGAAATGGAAGGGAGAGGGATTCCAGGAAATGCTGGAGGCAGGGGAAGGAGAGAATGGGGAAAACAAGTTGTATCTCATCAGCAGCAGGAGAAACAATCTGATGATACCGAGGTGGATGGAAATAATCAaagggggagaggaagaggaagggggagggggagaggaggaggaagaAACAATCATCACCAGAAGGACCGAGCCATGAAGAAGCATTTCTCTGGAGTGAGTGGTTTTTAA 2547 0.4111 MSNRSGQGRQDKNKNNNNNNNNNNDDKGFNNSQKKFVPKNPNPTLSTSLRQPSKALNRAHNGNFVNYLPHDEAVAAGLGAEDGALDPLESQRVVDLLNSHLSRLLKLKPKDFWRQVATDTSLHEFLDSFLQFRSRWYDFPHRGVRGIVAGVIVGELDLSRRVFMVLFRISSNKDPGARPADSLSLRDHGVLLQEKKLLDLPKLLDICAIYYHENEELTRSLVRNALSAQPQIHNNLTAVISHFLGIVSTMHERCSSSLEVLFSSGNLDHHNASFLQADLLEVMDFINDAIVSMDSFVSAYEPSAVFFSCPVEMSYGNEELLSLLARLHDSLIPSLQKGFRMIFADKQDGTVSNILISLKMLRMRLIKFGWQLLHLCYLSDEVFRDSIPLPAATKMFPANVEDPFIRADILVQTFREINSVSLQFQEMHQKETFLQDVERNFNILSRVDRLKDSGWIFIDDEQLQYISGMLSSVKEIYKQPYSAASSVPNQTLLTDEDAAITESNISQIRDLFPDYGRGFLAACLEVYDQNPEEVIQRILEGTLHEDLQKLDTSLETLPLAKSTTVGGNDKGKGKLIDSMSASSNPEVVRGKQKTEVPLMSSSASLGKFVRKSKADRPDVSILDNKDEKDASKTAAMLLQYEYEDEYDDSFDDLGLSVADSGVEENEILGDTINAKSGKSWATETGNSVKNAPDSKWGSRKKPQYYVKDGKNYSYKVAGAVAVANSDEASLVNEAQKELIHGLGRGGNLPLGAVKKLTDSYKEDDNQFQVSEMEGRGIPGNAGGRGRREWGKQVVSHQQQEKQSDDTEVDGNNQRGRGRGRGRGRGGGRNNHHQKDRAMKKHFSGVSGF 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01809 848 Pfam CUE domain 502 542 IPR003892 GO:0043130
Cca03g01809 848 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 19 847 - -
Cca03g01809 848 SUPERFAMILY UBA-like 501 557 IPR009060 GO:0005515
Cca03g01809 848 MobiDBLite consensus disorder prediction 765 848 - -
Cca03g01809 848 MobiDBLite consensus disorder prediction 678 700 - -
Cca03g01809 848 MobiDBLite consensus disorder prediction 678 693 - -
Cca03g01809 848 MobiDBLite consensus disorder prediction 789 816 - -
Cca03g01809 848 Gene3D - 501 543 - -
Cca03g01809 848 MobiDBLite consensus disorder prediction 1 51 - -
Cca03g01809 848 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 19 847 - -
Cca03g01809 848 CDD CUE_ASCC2 502 541 IPR041800 -
Cca03g01809 848 MobiDBLite consensus disorder prediction 817 838 - -
Cca03g01809 848 ProSiteProfiles CUE domain profile. 500 543 IPR003892 GO:0043130
Cca03g01809 848 SMART cue_7 500 542 IPR003892 GO:0043130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01809 K18667 - gmx:100778129 1351.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01809 03 37311707 37319052 Cca03g01809 03 37311707 37319052 ECH