Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01801 ATGCATAGGCATAGGCATGTGTGGAAGCAGATGAGAGACAGGGAGGCTGGGAAAGTGCGTCCACATTCCTTCGCGAACAGGATAAAATCGAATCGCATTTCGCAGCTCCAATTGTCGAATCACAAGGACATCGTGTCCCCTCACAAAGGCGCCATCAACTCCCTTCAGATTGATTCGACAGAGGGAAGATATTTGCTCTCCGCCGCCTCCGATGCCTCCGTAGCCGTCTACGACGTTCAACGACCCACCGCCATATCAAAACACACCTCCTTATTCGTCCTTGACAAGCACCACCACCAAGGTCACAAATATGCCGTCTCCTCAGCTATATGGTATCCCATTGACACCGGCTTGTTCGTCACTGGCTCATACGATCATCACATCAATGTTTGGGACACCAATACCACCCAGGTAGTGGTGAATTTCAAGATGCCTGGAAAGGTGCATAGGACTGCAATGTCCAATTTGTCAACGTCTCACATGCTTATTGCTGCTGGCACTGAGGATGTCCAAGTTCGTCTTTGTGATATTGCTTCCGGGGCTTTTGCTCACACTTTGTCCGGACACCGTGATGGAGTAATGACTGTTGAATGGTCTAATTCAAGTGAATGGGTCTTGGTTACTGGGGGATGTGACGGTGCAATACGTTTTTGGGACATCAGGCGTGCTGGTTGTTTCCTAGTTTTAGATCAATCTCGGACTCAGCTTGGAAGACGGCCTCCTGTACTGAAACGTTCTATGATAACTAAGGACTCAAGTACAAAGTTGCGTGCGGCACAAAAGAAACACGCTATTGGAAGTGGTAGCAGACAACTACCAATTGGCAGAGTTCCATCCAAGGGACCAATGAAGCAGAGGTTACATCCAGGAATGTTATCTACTCAGGATCGTGCAACTGCTCATTATGGTGCTGTGACAGGGTTAAAAGCGACAGGGGATGGCATGTATCTACTTAGTGCAGGGTCTGATTCAAGATTGAGGTTGTGGGATGTTCAATCTGGCTGTGACACACTTGTTAACTTTGAAACAGTGCGCCTGCAAACAAACAAACCCCTTCAATTTGCCACCACTCAAGATGCAACCCTTGTTTTTGTTCCATGCATGAGATCTGTGAAAGCATTTGACATGTGGTCTGGGAACATGAACTCAATATTACGTGGCCACTATGAATGTGTGAACTCTTGCTGGTTTAATCAACAAGATCAGGAACTGTACACTGGTGGAAATGATAGACAAATTCTTGTCTGGTCACCTGCGAGATCAATCGCTGATGAAATGGATGAAGGACCAGCTGAGGATCAGGATAACTGGAGTAGCTGA 1320 0.4712 MHRHRHVWKQMRDREAGKVRPHSFANRIKSNRISQLQLSNHKDIVSPHKGAINSLQIDSTEGRYLLSAASDASVAVYDVQRPTAISKHTSLFVLDKHHHQGHKYAVSSAIWYPIDTGLFVTGSYDHHINVWDTNTTQVVVNFKMPGKVHRTAMSNLSTSHMLIAAGTEDVQVRLCDIASGAFAHTLSGHRDGVMTVEWSNSSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSRTQLGRRPPVLKRSMITKDSSTKLRAAQKKHAIGSGSRQLPIGRVPSKGPMKQRLHPGMLSTQDRATAHYGAVTGLKATGDGMYLLSAGSDSRLRLWDVQSGCDTLVNFETVRLQTNKPLQFATTQDATLVFVPCMRSVKAFDMWSGNMNSILRGHYECVNSCWFNQQDQELYTGGNDRQILVWSPARSIADEMDEGPAEDQDNWSS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01801 439 Gene3D - 8 420 IPR015943 GO:0005515
Cca03g01801 439 PRINTS G protein beta WD-40 repeat signature 119 133 IPR020472 -
Cca03g01801 439 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Cca03g01801 439 PRINTS G protein beta WD-40 repeat signature 317 331 IPR020472 -
Cca03g01801 439 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g01801 439 ProSitePatterns Trp-Asp (WD) repeats signature. 317 331 IPR019775 -
Cca03g01801 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 45 87 IPR001680 GO:0005515
Cca03g01801 439 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 8 439 IPR042238 GO:0006283
Cca03g01801 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 221 - -
Cca03g01801 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 221 IPR001680 GO:0005515
Cca03g01801 439 SUPERFAMILY WD40 repeat-like 45 419 IPR036322 GO:0005515
Cca03g01801 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 339 IPR001680 GO:0005515
Cca03g01801 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 99 141 IPR001680 GO:0005515
Cca03g01801 439 Pfam WD domain, G-beta repeat 97 132 IPR001680 GO:0005515
Cca03g01801 439 Pfam WD domain, G-beta repeat 382 417 IPR001680 GO:0005515
Cca03g01801 439 Pfam WD domain, G-beta repeat 184 219 IPR001680 GO:0005515
Cca03g01801 439 Pfam WD domain, G-beta repeat 299 330 IPR001680 GO:0005515
Cca03g01801 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 385 417 - -
Cca03g01801 439 ProSitePatterns Trp-Asp (WD) repeats signature. 206 220 IPR019775 -
Cca03g01801 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 417 IPR001680 GO:0005515
Cca03g01801 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 298 334 - -
Cca03g01801 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 99 135 - -
Cca03g01801 439 SMART WD40_4 179 219 IPR001680 GO:0005515
Cca03g01801 439 SMART WD40_4 87 132 IPR001680 GO:0005515
Cca03g01801 439 SMART WD40_4 378 417 IPR001680 GO:0005515
Cca03g01801 439 SMART WD40_4 288 330 IPR001680 GO:0005515
Cca03g01801 439 SMART WD40_4 38 78 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01801 159 334 Miscellaneous Gene Families AT5G08390 25.000 8.86e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01801 K10570 - gmx:100815581 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01801 03 37217517 37220900 Cca03g01801 03 37217517 37220900 ECH