Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01787 ATGTCATGGCTGGCTCGTTCTTTCGCAAACTCTCTCCGGCTCGATGGTGACGGAGACGGAGAAAACGACGTCGTACTCGATCCACCTACCACGTCATCGAAAGATCCCCCGCCAGAAAATGTGCTCCGATCAGAACCAGAAGAATACGAAGACACGCAAGGACGCGGAGTCAAAGAGGACCTCGACGAAATCAAGCAAACCCTAACTCGTCAATTTTGGGGAATGGCCTCCTTCCTCGCTCCGCCACCTTCAAATTCTCAATCCGATCCCTCTCCTTTCGTCTCCGACCAATCCAATCATCGCTCTATTTCTCAACCACAATTGGATGACGCTGCCGCGGTTTCCGATCACTCTTCGGACGCCGAACAGGAGAACGGTCCTGAACCGAATTCGTTTTCCTTCGGATCCGATTCGGAAGGGAATTGCGGTTTCGAGCTACGCGCGGTTGGAATTACGGAAGAGGTGTTGGCATTCGCCATGAACATCGCTATGCATCCCGAGACGTGGTTGGATTTTCCTATTGAGGAGGAAGACGACACCGACGATTTTGACATGTCTGATGCACAACAAGAGCATGCTGCGGTTGTTGAAAGATTGACTCCTAGATTAGTTGCCCTCAGAATCGAACTATGTCCTTGTCATATGAGCGAAAGTTACTTCTGGAAAGTCTATTTTGTACTTTTGCATTCAAGGCTCAATAAAGAAGATGCCGGGATTTTGTCTACACCCCAGGTCATGGCAGCCAGAGCAATGTGGATGCAGGAATTGCAGAAACAAACAAAGCCTGAATTTGAAATTTTTGGAAGAAATGCTTCCTACCCAAGAGACATTGCACAGCATGATGATTTTACTCCCAACTTATCAGATGATGGTTATTCTGATGACATGCCTAATCGGACATTTGGATATAGAACAACCTCTTTCTCTATGATGTCAGATTATGAAACTGACAAGCACATGGTTGAAAGTTCTGGAGTGCATTTCACTGATAAGTCTGTTATTGAGGAAAATTCAATTATTAAAACTGAAAACAAGGATCTAAAATGTGGTCGACCTTCTCATattatcattcaggattatgatgatgatgatgatgaATGGCCAGAGGAAGATTCTGATTCAGGGGGATATGGTGGAACAACTCACCCAATGGTGAATGAAGAAGATATATCTTTCAGCGATCTCGAGGATGATGATTATGGCATTAAACCTGTTAGTTCCAGCACAGGTTCAAAGGTGGTATGA 1245 0.4434 MSWLARSFANSLRLDGDGDGENDVVLDPPTTSSKDPPPENVLRSEPEEYEDTQGRGVKEDLDEIKQTLTRQFWGMASFLAPPPSNSQSDPSPFVSDQSNHRSISQPQLDDAAAVSDHSSDAEQENGPEPNSFSFGSDSEGNCGFELRAVGITEEVLAFAMNIAMHPETWLDFPIEEEDDTDDFDMSDAQQEHAAVVERLTPRLVALRIELCPCHMSESYFWKVYFVLLHSRLNKEDAGILSTPQVMAARAMWMQELQKQTKPEFEIFGRNASYPRDIAQHDDFTPNLSDDGYSDDMPNRTFGYRTTSFSMMSDYETDKHMVESSGVHFTDKSVIEENSIIKTENKDLKCGRPSHIIIQDYDDDDDEWPEEDSDSGGYGGTTHPMVNEEDISFSDLEDDDYGIKPVSSSTGSKVV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01787 414 MobiDBLite consensus disorder prediction 1 63 - -
Cca03g01787 414 SUPERFAMILY BSD domain-like 150 236 IPR035925 -
Cca03g01787 414 MobiDBLite consensus disorder prediction 40 63 - -
Cca03g01787 414 Gene3D BSD domain 148 239 IPR035925 -
Cca03g01787 414 ProSiteProfiles BSD domain profile. 180 232 IPR005607 -
Cca03g01787 414 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 411 - -
Cca03g01787 414 MobiDBLite consensus disorder prediction 360 414 - -
Cca03g01787 414 MobiDBLite consensus disorder prediction 80 114 - -
Cca03g01787 414 SMART wurzfinal6 180 232 IPR005607 -
Cca03g01787 414 Pfam BSD domain 180 236 IPR005607 -
Cca03g01787 414 MobiDBLite consensus disorder prediction 77 137 - -
Cca03g01787 414 PANTHER BSD DOMAIN-CONTAINING PROTEIN 1 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01787 Cca-Chr3 37080247 37083899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01787 146 232 EF-hand Containing Proteins AT1G69030 29.293 5.50e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01787 - - ccaj:109796228 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01787 03 37080247 37083899 Cca03g01787 03 37080247 37083899 ECH