Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01769 ATGGCGCCACCGTTGTTCAATTGGGGGGCGAAGGACACTCACAGGGGAACGCCGGTGGTGGTGAAGATGGAGAACCCGAATTGGTCCATGGTGGAGCTGGAGGGTCCCGAAGAAGAGGACTTAATCATAAGCGATTCCTCGAGGGAGAAAGGAAAAGGAAGAGGCAAAAACGCCAAACAGCTCACATGGGTTCTCCTCCTCAAAGCGCACCGCGCCGCCGGCTGCTTGACCTCCCTCGCGCCGGCATTGTGGGGGCTCGTCTCCGCCGTCAAGCGCCGCGTCGCCGCCGGAAAAACCGACGCCGACACCGACGGTGGCCGGGAGAACGAGAGCGCCACCGTGAAGACGCGCTTCTATTCCTGCATCAAGCTCTTCCTGATTCTTCTTGTTGGTCATTGGTTAGCTGGTTTCTCCGGCAATTGTTCACATGGTGATCCTTCTTTAGCTGAGTTATTGGCCATTCTGGAAGGTCTCAAGATCGCATGGCATATGGGATTTAAAACTGTTCAATGTATGATTGACTCCATGGATATCGTGCAGTCTCTTCTTCATAGAGATCAAGCTTACCTACACTCTCATGCTTCTTATCTCTTTGATATTTTCTCCTTGGTGGACAAACCTTGGACGCCTGTCCCCAAGGGTGGGGCTGTGGTAGATCTCGAATCCGGAGAGAAGGGTTTTGGTTTTTTCCCAATGGTGCTCGTGCAGATCCCTATGTGCAATGAGAAAGAGGTTTACCAGCAGTCAATTGCTGCGGTGTGCAATTTGGATTGGCCCAAAGGGAAGTTGTTGATTCAGGTTTTGGATGACTCGGATGACCCAACCACGCAGTTGTTGATAAAGGAGGAGGTTCAGAAATGGCAACAAGAGGGTGCCAACATTTTGTACCGCCATCGCGTCATAAGAGATGGTTACAAAGCTGGGAATTTGAAATCCGCCATGAATTGTAGCTACGTCAGAGACTACGAGTTTGTTGCAATTTTTGATGCAGATTTTCAGCCTACGCCGGATTTCCTCAAGAAAACTGTTCCTCATTTTAAGGTGGGTGAACTGGGCCTCGTTAAGCAGAGGTGGTCTTTTGTGAACAAGGATGAGAACCTGTTAACGAGGTTGCAGAACATTAACCTGGCTTTTCATTTTGAAGTGGAGCAGCAAGTGAATGGGATTTTTATTAACTTCTTTGGGTTCAATGGAACCGCGGGAGTGTGGAGGATAAAGGCTTTGGAGAATGCTGGTGGTTGGCTGGAGAGGACTACTGTTGAGGACATGGACATTGCCGTTCGAGCTCATCTTCATGGCTGGAAATTCATTTTCCTCAATGATGTTGAGTGCCAATGTGAGCTACCGGAATCCTACGAAGCTTACAGGAAACAACAGCATAGATGGCATTCCGGGCCAATGCAATTATTCCGCCTTTGTTTGCCTGATATAATACGGGCCAAGATAAGTGTGTGGAAGAAATTCAACATGATATTCCTATTCTTTCTTCTTAGAAAGCTGATTTTACCATTCTATTCATTCACCTTGTTTTGTATAATTCTGCCTATGACAATGTTCGTACCAGAGGCCGAGCTTCCGGCGTGGGTTGTGTGTTACATCCCTGCTGCCATGTCTTTTCTCAACATTCTTCCAGCTCCAAAGGCCTTCCCCTTTATTGTCCCTTATCTCCTATTTGAGAACACCATGTCAGTTACCAAATTCAATGCCATGATCTCAGGCCTGTTCCAGCTAGGTAGTGCTTACGAGTGGGTGGTGACTAAGAAATCCGGTCGTTCCTCGGAGGGCGATTTGGTTTCACTGGTTGAGAAACCAAAGCATCAAAGAGGGTCCTCAGCACCGGATCTAGAGGAAATGAAAGAGGAACTTAGAAGGCAGGAGCAGCAAAAGGCCTCTAAGAAGAAGAAAAAGCATAACAGAATATATATGAAGGAGCTTGCTTTGGCCTTTCTACTTCTAACAGCCTCCGCAAGGAGTCTCCTCTCAGCTCAAGGGATCCACTTCTACTTTTTGTTATTCCAGGGCATATCATTCCTCTTGGTTGGTCTAGACTTGATTGGTGAACAGACATTTATTTGGTACACTGGAGAGCGTAGAGGACCCATAGTGCTGCTTTTTCTTGCTCATGCTCCTCCCTCCAGGCTCGTAAATCAAATCAACTCAAATCCTCCCAATACCATACTATTGTCTTGTTATGGACCGAAACGGGGTGCAATTGAGGCTGGTGTTAGGGCGTTTTCATTCAATGTGACAGGTAGCGGTGGCAAACGGTTTTGTGGGGCTTATCAAGTTGGGAGCTTGTGGCGCGTTTGGAGGCCCCACCCTATTCTTACTTAA 2334 0.4786 MAPPLFNWGAKDTHRGTPVVVKMENPNWSMVELEGPEEEDLIISDSSREKGKGRGKNAKQLTWVLLLKAHRAAGCLTSLAPALWGLVSAVKRRVAAGKTDADTDGGRENESATVKTRFYSCIKLFLILLVGHWLAGFSGNCSHGDPSLAELLAILEGLKIAWHMGFKTVQCMIDSMDIVQSLLHRDQAYLHSHASYLFDIFSLVDKPWTPVPKGGAVVDLESGEKGFGFFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKGKLLIQVLDDSDDPTTQLLIKEEVQKWQQEGANILYRHRVIRDGYKAGNLKSAMNCSYVRDYEFVAIFDADFQPTPDFLKKTVPHFKVGELGLVKQRWSFVNKDENLLTRLQNINLAFHFEVEQQVNGIFINFFGFNGTAGVWRIKALENAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIRAKISVWKKFNMIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPAAMSFLNILPAPKAFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEKPKHQRGSSAPDLEEMKEELRRQEQQKASKKKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQTFIWYTGERRGPIVLLFLAHAPPSRLVNQINSNPPNTILLSCYGPKRGAIEAGVRAFSFNVTGSGGKRFCGAYQVGSLWRVWRPHPILT 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01769 777 MobiDBLite consensus disorder prediction 603 635 - -
Cca03g01769 777 Pfam Reverse transcriptase-like 131 206 IPR002156 GO:0003676|GO:0004523
Cca03g01769 777 SUPERFAMILY Nucleotide-diphospho-sugar transferases 233 508 IPR029044 -
Cca03g01769 777 Pfam Glycosyl transferase family group 2 325 529 IPR001173 -
Cca03g01769 777 Coils Coil 615 635 - -
Cca03g01769 777 CDD RNase_H_like 131 208 IPR044730 -
Cca03g01769 777 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 228 447 IPR029044 -
Cca03g01769 777 MobiDBLite consensus disorder prediction 603 628 - -
Cca03g01769 777 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 11 689 - -
Cca03g01769 777 PANTHER - 11 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01769 Cca-Chr3 36832894 36838923 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01769 4 689 Miscellaneous Gene Families AT4G07960 69.916 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01769 - - gmx:100805969 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01769 03 36832894 36838923 Cca03g01769 03 36832894 36838923 ECH