LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g01764	ATGAACATGTTGTCTAGGAAGACTAGTCAAGACTCTCATGGCCAAGACTCTTCTTACTTTCTAGGATGGCAAGAGTACGAGAAGAATCGTTATCACCCCATTCAAAATCCAATGGGAATCATTCAGATGGGACTTGCAGAGAATCAGCTTTCATTTGACCTTCTTAAATCATGGCTTCGAAGAAATCCTGACATAGTGGGGTTGAAGAAAAATGGGGTTTCCATATTTAAAGAGCTTGCTTTGTTCCAGGATTATCATGGGTTACCTGCTTTAAAAAATGAACTGGTGGAGTTTATGGAAAAAATAAGAGGAAACGAAATGAAATTTGCTCCGGAGAAGCTGGTCCTCACAGCCGGCGCAACTCCGGCGAATGAGATTCTGATGTTTTGTCTTGCTGATCCAGGGGAGGCTTTCATTCTTCCCACGCCCTATTATCCTGGATTTGATAGGGACCTGAAATGGAGAACTGGGGTTGAGATTGTTCCGATGCATTGCTCAAGCTCCAATGGGTTCAGAATCACTTCCTCTGCTTTAGAACGAGCCTATAAACAAGCACAAAAAATGAATCTCAATGTTAAAGGTGTTCTAGTAACCAACCCTTCAAACCCACTAGGCGTGACAATGACCAAAACAGAGCTTAACTACCTAGTCAATTTTGCAATTGACAAAAACATTCACATAATAAGCGACGAAATCTATTCAGGGACAGTCTTTGCCCCACCTAAATTTGTAAGCATCATGGAAGTTGTGAACGAGAGAATTAGTGATAACAACATTTGGAATCGAATTCACATTGTTTATAGTCTTTCCAAAGACCTTGGCATACCAGGGTTTCGAGTGGGGATGATTTACTCCAATAACGAAAAGGTTGTGTCTGCTGCTACAAAAATGTCAAGCTTTGGATTGGTATCCTCACAAACTCAGTATTTGGTTGCGAACTTACTCATGGACAAAAAATTCACTTTCAAGTACATGGAAGAGACTCAGAGGAGACTGAAGAGACGCAAGGAAATGCTTGTGTCTGGACTCAGGAATGCGGGGATTCTTTGCTTGAAAAGCAATGCTGGTTTGTTCTGTTGGGTGGACATGAGACATCTATTAAGCTCTGCCACTTTTGAGGCAGAAAAGGAGCTTTGGATTAAGATTCTATGCCATGCTGGGTTGAACATATCTCCTGGGTCTTCATGCCATTGTTGTGAACCCGGGTGGTTCAGGGTGTGCTTTGCCAACATGTCTGAGGACACATTGAAAATTGCAATGGAACGGATGAAGACCTTTACAGATTCAACCAACTCTGCTGTCAAGGGCAGTAATAACAGTTATTAG	1326	0.4201	MNMLSRKTSQDSHGQDSSYFLGWQEYEKNRYHPIQNPMGIIQMGLAENQLSFDLLKSWLRRNPDIVGLKKNGVSIFKELALFQDYHGLPALKNELVEFMEKIRGNEMKFAPEKLVLTAGATPANEILMFCLADPGEAFILPTPYYPGFDRDLKWRTGVEIVPMHCSSSNGFRITSSALERAYKQAQKMNLNVKGVLVTNPSNPLGVTMTKTELNYLVNFAIDKNIHIISDEIYSGTVFAPPKFVSIMEVVNERISDNNIWNRIHIVYSLSKDLGIPGFRVGMIYSNNEKVVSAATKMSSFGLVSSQTQYLVANLLMDKKFTFKYMEETQRRLKRRKEMLVSGLRNAGILCLKSNAGLFCWVDMRHLLSSATFEAEKELWIKILCHAGLNISPGSSCHCCEPGWFRVCFANMSEDTLKIAMERMKTFTDSTNSAVKGSNNSY	441

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g01764	441	Gene3D	-	63	317	IPR015421	GO:0003824
	Cca03g01764	441	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	43	69	-	-
	Cca03g01764	441	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	76	92	-	-
	Cca03g01764	441	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	113	133	-	-
	Cca03g01764	441	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	135	156	-	-
	Cca03g01764	441	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	189	213	-	-
	Cca03g01764	441	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	225	248	-	-
	Cca03g01764	441	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	262	286	-	-
	Cca03g01764	441	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	294	317	-	-
	Cca03g01764	441	PANTHER	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 11	3	432	-	-
	Cca03g01764	441	Gene3D	Aspartate Aminotransferase, domain 1	29	422	IPR015422	GO:0003824
	Cca03g01764	441	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	268	281	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Cca03g01764	441	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	3	432	-	-
	Cca03g01764	441	CDD	AAT_like	63	424	-	-
	Cca03g01764	441	SUPERFAMILY	PLP-dependent transferases	4	426	IPR015424	-
	Cca03g01764	441	Pfam	Aminotransferase class I and II	41	422	IPR004839	GO:0009058\|GO:0030170

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g01764	Cca-Chr3	36773921	36778884	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g01764	K01762		-	gmx:100803507	768.844

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca03g01764	03	36773921	36778884	Cca03g01764	03	36773921	36778884	ECH