Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01760 ATGATTCGAATGTACGTTCCCACTTTAAGGAAATTGCTTCTTCCAGCTGCTTCTGCTTCTTCCAAGATCGGAACTTACAAATGCTTTGCTTCTCAGCCCTGCCCTCTTCCAAGTCCCAATCCAAGTTACAGTGGTGAGGAGTATGCTGACGTGGACTGGGACAGTCTTGGATTTGGATTGATGCCCACTGATTATATGTACATTAGTAAATGCTCTGAGGGACAAAATTTTGGACATGGACAACTCACTCGTTATGGAAACATTGAACTTAGCCCATCAGCTGGTGTCCTAAATTATGGCCAGGGATTATTCGAAGGCACGAAAGCATACAGAAAAGAAAATGGGGGGTTGCTGCTGTTCCGTCCCGAAGAAAATGCAATTCGCATGCAGAATGGCGCGGAAAGAATGTGCATGGCATCCCCTTCCATCGATCAATTTGTGGATGCTTTGAAGCAAACGGTCTTGGCTAATAAGCGTTGGGTTCCTCCAGCGGGTAAAGGGTCCCTGTACCTTAGGCCTCTGCTCTTAGGAACTGGTCCAGTTTTGGGGTTGGCTCCCGCACCTGAATACACGTTCCTCATATTTGCTTCCCCTGTTCGCAACTATTTTAAGGAGGGTTCGGCTCCGCTCAACTTGTACGTGGAGGAGAACTTTGACCGTGCTTCTCGTCGCGGCACTGGAAACGTCAAAACCATTTCCAATTATGCCCCCGTCTTGATGGCACAAATTAATGCCAAGAGAAGAGGATTTTCGGATGTGCTATACCTTGATTCAGTCACCAAGAAAAATCTCGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGCAAATGCATCTCAACACCCGCTACTAATGGAACTATTCTGTCCGGGATTACTAGAAAAAGTGTCATTGAAATAGCTCGTGATCATGGCTATGAGGTGGAAGAGCATGCTGTTGGCGTTGATGAAGTTTTCTGCACTGGAACTGCGGTCGGTGTTGCTCCCGTAGGGACTATCACATACAGGGATACAAGGATGGAATATAAAACAGGTTCTGGATCCATTTGTCAGGAGCTGCACAATACCATTTCAGGAATTCAAACGGGTATTATTGAAGATAAGAAGGGATGGATCGTTGAAGTTGACTAG 1134 0.4594 MIRMYVPTLRKLLLPAASASSKIGTYKCFASQPCPLPSPNPSYSGEEYADVDWDSLGFGLMPTDYMYISKCSEGQNFGHGQLTRYGNIELSPSAGVLNYGQGLFEGTKAYRKENGGLLLFRPEENAIRMQNGAERMCMASPSIDQFVDALKQTVLANKRWVPPAGKGSLYLRPLLLGTGPVLGLAPAPEYTFLIFASPVRNYFKEGSAPLNLYVEENFDRASRRGTGNVKTISNYAPVLMAQINAKRRGFSDVLYLDSVTKKNLEEVSSCNIFIAKGKCISTPATNGTILSGITRKSVIEIARDHGYEVEEHAVGVDEVFCTGTAVGVAPVGTITYRDTRMEYKTGSGSICQELHNTISGIQTGIIEDKKGWIVEVD 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01760 377 Pfam Amino-transferase class IV 102 333 IPR001544 GO:0003824
Cca03g01760 377 Gene3D - 211 376 IPR043132 -
Cca03g01760 377 PIRSF BCAT1 37 377 IPR005786 GO:0004084|GO:0009081
Cca03g01760 377 Gene3D - 37 210 IPR043131 -
Cca03g01760 377 PANTHER AMINO ACID AMINOTRANSFERASE 16 377 IPR005786 GO:0004084|GO:0009081
Cca03g01760 377 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 16 377 - -
Cca03g01760 377 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 44 373 IPR036038 GO:0003824
Cca03g01760 377 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 79 376 IPR005786 GO:0004084|GO:0009081
Cca03g01760 377 CDD BCAT_beta_family 89 364 IPR033939 GO:0004084|GO:0009081
Cca03g01760 377 ProSitePatterns Aminotransferases class-IV signature. 266 295 IPR018300 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01760 Cca-Chr3 36714273 36720473 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01760 K00826 - gmx:100782644 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01760 03 36714273 36720473 Cca03g01760 03 36714273 36720473 ECH