Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01746 ATGGCGGAAGAAGCACAGTATTCATCGGGAACCGACTCCGCACCCCTCAAGCGCAAGTACGACGACCAACCCAACGACAGACCCACCGGCTTCTCCGCCGGCCCTGCCACCGGCATCGAGCTCGCCAAGCAGCGTGCTCAAGAAGTCGCCGCTCGTCTCCTCAGCGGCGCTCCTCCTCCCCCCCCCGACGCCAACAAGCGTCCCAGGCCCGATTCCGGCTTCGATTCCCTCGATGCCAAGCCTCAGTACTCAGCAGTTCCTCCTGTCTCCTATGCTCACCAAGGAACGAGCAAGAAGATAGATATCCCCAACGGCAGGGTTGGTGTCATTATTGGAAAAGCTGGAGAGACCATCAAGTATCTCCAGCTGCAATCTGGCGCCAAAATTCAAGTTACTCGCGATATGGACGCTGATCCTAATTCCCCGACTAGGATGGTTGAGCTCATGGGAACTCCTGAAGCAATTGCCTCTGCTGAGAAACTCATCAATGAAGTTCTTGCTGAGGCTGAATCTGGAGGTTCTGGCATTGTTGCTCGAAGACTGACTGGACAAGCTGGGTCGGATGAATTTTCCATGAAAATCCCAAATAATAAGGTTGGCCTTATAATTGGTAAAGGGGGTGAAACAATAAAGAATATGCAAGCTTCGACTGGAGCACGGATTCAGGTGATACCTCTGCATCTTCCCCCTGGTGACACATCAACTGAAAGGACATTAAAAATTGATGGGACTCCTGAGCAAATTGAGTCTGCAAAGCAGTTGGTTAATCAAGTTATCAGTGGCGAGAATCGTCTTAGAAATCCTGCAATGTCTGGTGGTTATCCTCAGCAAGGTTACCAATCTCGACCACCCTCTAACTGGGCTCCTCCTGCCCCAATGCAGCAACCTGGTTATGGCTATGTGCAACCTGGAGCATACCCTGGCCCATCACCCCAGTATAACATGCCTCAGCCACCATATGCAGGCTATCCTCCTCAGCAACCTGGTGGATATTCCACCGGTTGGGACCAGTCTACTGCTCCACCTCACCAGCAGTCTGCTCATGCTGGCGGCTATGATTACTATAGTCAACAGCCACAGCAATCACAAAATCCTGGTGGTTCTGCTGCTCCTGCTGATGGCTCTGCATACAATTACAGTCAGCCACCTTCCTCTGGTTATAGCCAACCTGGGCAGGGTTATGCACAGGACAGTTATAATGCGTATAATGCACAATCACAATCAGGGTATGGGCAGCCACAACCATATGATCAACAGCAAGGGTATGGGTCAGCTACTGGTGGCTATGGTAGTGGAAGTAACCCTGCCCAAGAGGGCCACACTGCAAACTATCCTTCCCAGGGAGATTCAACCCAAGCTTCATCTGCTCAACCGACTGCGATTGCACAGCAAGGTTATCCTGCTGCCCAACAGCCCAGCTCGAACACTGCCAACTACCCACCTCAAGGGACTCCAGGTTATGGGGTTCCCCCTACATCTCAAGCAGCTTATGGTAATCAACCGCAGCCTGGTTATGGGGCTGGTTATGGACCCCCTCAATCTCAGAAGCCTAGTGGCACTCCACCTGTTTATGGACAGTCACAGTCTCCTAGCGCAGGAGGAGGCTACAGTCAGTCAGCATATCCCGCACAGCCCCCACCTTCAGGGTATGCTCAACCTGAATCGAGGGCACCACCATCTGGTTATGGTGGGGCGGTGCAACCAGGGTACCCTCCTCAAACGTATGGTGCTCCTCCTCAAGGTTATGGTCAGACACCACCTCCATACAGCAACACTTATGGTGCTGCTGGTTATACTCAGACTGCGGCATATACTGGTGATGGTAATGCCAGTGCGAATGCTCAGGCTCCTCAGAATGCCGTTGCTAAAACATCACCTCAGACTTGA 1887 0.5241 MAEEAQYSSGTDSAPLKRKYDDQPNDRPTGFSAGPATGIELAKQRAQEVAARLLSGAPPPPPDANKRPRPDSGFDSLDAKPQYSAVPPVSYAHQGTSKKIDIPNGRVGVIIGKAGETIKYLQLQSGAKIQVTRDMDADPNSPTRMVELMGTPEAIASAEKLINEVLAEAESGGSGIVARRLTGQAGSDEFSMKIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTLKIDGTPEQIESAKQLVNQVISGENRLRNPAMSGGYPQQGYQSRPPSNWAPPAPMQQPGYGYVQPGAYPGPSPQYNMPQPPYAGYPPQQPGGYSTGWDQSTAPPHQQSAHAGGYDYYSQQPQQSQNPGGSAAPADGSAYNYSQPPSSGYSQPGQGYAQDSYNAYNAQSQSGYGQPQPYDQQQGYGSATGGYGSGSNPAQEGHTANYPSQGDSTQASSAQPTAIAQQGYPAAQQPSSNTANYPPQGTPGYGVPPTSQAAYGNQPQPGYGAGYGPPQSQKPSGTPPVYGQSQSPSAGGGYSQSAYPAQPPPSGYAQPESRAPPSGYGGAVQPGYPPQTYGAPPQGYGQTPPPYSNTYGAAGYTQTAAYTGDGNASANAQAPQNAVAKTSPQT 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01746 628 ProSiteProfiles Type-1 KH domain profile. 95 162 - -
Cca03g01746 628 MobiDBLite consensus disorder prediction 330 482 - -
Cca03g01746 628 MobiDBLite consensus disorder prediction 309 325 - -
Cca03g01746 628 MobiDBLite consensus disorder prediction 265 628 - -
Cca03g01746 628 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 56 615 - -
Cca03g01746 628 MobiDBLite consensus disorder prediction 586 628 - -
Cca03g01746 628 ProSiteProfiles Type-1 KH domain profile. 187 255 - -
Cca03g01746 628 Pfam KH domain 191 256 IPR004088 GO:0003723
Cca03g01746 628 Pfam KH domain 99 164 IPR004088 GO:0003723
Cca03g01746 628 CDD KH-I 189 255 - -
Cca03g01746 628 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 56 615 - -
Cca03g01746 628 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 190 262 IPR036612 GO:0003723
Cca03g01746 628 Gene3D K Homology domain, type 1 90 182 IPR036612 GO:0003723
Cca03g01746 628 Gene3D K Homology domain, type 1 183 284 IPR036612 GO:0003723
Cca03g01746 628 SMART kh_6 94 167 IPR004087 GO:0003676
Cca03g01746 628 SMART kh_6 186 260 IPR004087 GO:0003676
Cca03g01746 628 CDD KH-I 97 162 - -
Cca03g01746 628 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 97 173 IPR036612 GO:0003723
Cca03g01746 628 MobiDBLite consensus disorder prediction 1 98 - -
Cca03g01746 628 MobiDBLite consensus disorder prediction 519 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01746 Cca-Chr3 36562130 36576941 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01746 K13210 - gmx:100797476 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01746 03 36562130 36576941 Cca03g01746 03 36562130 36576941 ECH