Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01726 ATGGATTCTTCACAAGGGTCCACCATTGCTGGTTTCGTGGACAAAGCACCATCCATTCAGAGGAGTGAATCTAGTTTTGATGGCGTTCCTGTCTATGTTAAGGAGTTAATCGCCGGAGGCTTTGCTGGTGCGCTTTCTAAGACCACCGTCGCACCCCTCGAAAGGGTCAAGATACTTTGGCAGACAAGGACAGCTGGATTTCACTCTATTGGGGTGTATCAATCTTTGAATAAGATACTGAAGCATGAAGGTTTCCAAGGATTATACAAAGGAAATGGAGCTAGTGTTATCCGCATTGTTCCATATGCTGCCTTGCATTTTATGACATATGAGCGCTACAAAAGTTGGATCTTGAACAATTATCCTGTGCTGGGAACGGGTCCTTTTATTGATCTTTTAGCAGGCTCTGCTGCAGGAGGAACTTCAGTTTTGTGTACCTACCCCTTGGATCTTGCTCGAACCAAACTTGCTTACCAGGTGGCAGACACGAGAGGAAGTATCAAAGATGGTGTGAAAGGAGTTCAATATCAAACTGCAAATAATGGCATTAAAGGTGTGCTTACAAGTGTTTATAAGGAAGGGGGAGTTCGTGGACTTTATAGGGGTGCAGGACCAACACTTACCGGAATTCTTCCCTATGCTGGTTTAAAGTTCTACATGTATGAGAAACTGAAGACTCATGTCCCTGAAGAACATCAGAAGTCCATTTTGATGCGTCTTTCTTGTGGAGCTCTAGCTGGATTGTTCGGGCAGACTTTAACATACCCTTTAGATGTTGTCAAGAGACAGATGCAGGTTGCCAGCCTGCAAAATGCTGCTCATGAGGAAGACAGATTCAAAAATACATTTGATGGACTTAGGAAGATTGCTCGTAATCAAGGGTGGAGGCAGCTGTTTCATGGCGTAAGCATTAACTATATAAGGGTAATGTTCACCTTATCATAG 945 0.437 MDSSQGSTIAGFVDKAPSIQRSESSFDGVPVYVKELIAGGFAGALSKTTVAPLERVKILWQTRTAGFHSIGVYQSLNKILKHEGFQGLYKGNGASVIRIVPYAALHFMTYERYKSWILNNYPVLGTGPFIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVADTRGSIKDGVKGVQYQTANNGIKGVLTSVYKEGGVRGLYRGAGPTLTGILPYAGLKFYMYEKLKTHVPEEHQKSILMRLSCGALAGLFGQTLTYPLDVVKRQMQVASLQNAAHEEDRFKNTFDGLRKIARNQGWRQLFHGVSINYIRVMFTLS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01726 314 Pfam Mitochondrial carrier protein 234 310 IPR018108 -
Cca03g01726 314 Pfam Mitochondrial carrier protein 127 229 IPR018108 -
Cca03g01726 314 Pfam Mitochondrial carrier protein 32 120 IPR018108 -
Cca03g01726 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 116 IPR018108 -
Cca03g01726 314 PANTHER GRAVES DISEASE MITOCHONDRIAL SOLUTE CARRIER PROTEIN-LIKE 20 310 - -
Cca03g01726 314 SUPERFAMILY Mitochondrial carrier 33 311 IPR023395 -
Cca03g01726 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 126 227 IPR018108 -
Cca03g01726 314 Gene3D Mitochondrial carrier domain 30 314 IPR023395 -
Cca03g01726 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 234 314 IPR018108 -
Cca03g01726 314 PRINTS Mitochondrial carrier protein signature 243 265 IPR002067 GO:0055085
Cca03g01726 314 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Cca03g01726 314 PRINTS Mitochondrial carrier protein signature 141 159 IPR002067 GO:0055085
Cca03g01726 314 PRINTS Mitochondrial carrier protein signature 91 111 IPR002067 GO:0055085
Cca03g01726 314 PRINTS Mitochondrial carrier protein signature 200 218 IPR002067 GO:0055085
Cca03g01726 314 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Cca03g01726 314 PANTHER SOLUTE CARRIER FAMILY 25 20 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01726 Cca-Chr3 36371527 36376417 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01726 27 309 Organic Solute Cotransporters AT4G26180 58.803 9.73e-117 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01726 - - gmx:100784421 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01726 03 36371527 36376417 Cca03g01726 03 36371527 36376417 ECH