Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01723 ATGGAGGAAGGGTACCCCAGAAGCAAGTTCAAGACGGTGTGTGTCTTCTGTGGCAGCAACTCTGGCAACCGGCAAGTCTTCAGTGATGCTGCGATTCAATTGGGCAATGAACTGGTTAAGAGGAACATAGACTTGGTGTATGGTGGGGGCAGTGTTGGGCTAATGGGCTTAATATCTCAGAGAGTGCATGATGGAGGCTGCCATGTCCTAGGGATCATTCCAAAAGCTCTCATGCCTCTCGAGATATCTGGTGAAACAGTAGGTGAAGTGAAAATTGTTTCAGATATGCACGAGCGTAAAGCTGCAATGGCTCAAGAAGCTGATGCATTTGTTGCTCTCCCGGGAGGATATGGAACCATGGAAGAGCTATTGGAGATGATAACTTGGGCCCAACTTGGAATTCATAAAAAGCCGGTTGGTCTACTGAATGTTGACGGTTACTATAACTGTTTGCTTGCATTATTTGACAATGGTGTTAAAGAAGGCTTCATTAAGCCTGGTGCACGGAATATAGTTGTCTCTGCTCCATCAGCCAAAGAACTTATGATGAAGATGGAGCATTACACTCCTTCACATGAACATGTTGCCTCTCATGAGAGCTGGCAGATGAAGCAATTAGGTAATTATCCAGGACGAGAAGATGCAGAGTGA 651 0.4562 MEEGYPRSKFKTVCVFCGSNSGNRQVFSDAAIQLGNELVKRNIDLVYGGGSVGLMGLISQRVHDGGCHVLGIIPKALMPLEISGETVGEVKIVSDMHERKAAMAQEADAFVALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNCLLALFDNGVKEGFIKPGARNIVVSAPSAKELMMKMEHYTPSHEHVASHESWQMKQLGNYPGREDAE 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01723 216 Pfam Possible lysine decarboxylase 55 185 IPR031100 -
Cca03g01723 216 Gene3D - 9 204 - -
Cca03g01723 216 TIGRFAM TIGR00730: TIGR00730 family protein 11 188 IPR005269 GO:0009691|GO:0016787
Cca03g01723 216 MobiDBLite consensus disorder prediction 193 216 - -
Cca03g01723 216 PANTHER LOG FAMILY PROTEIN YJL055W 8 206 - -
Cca03g01723 216 SUPERFAMILY MCP/YpsA-like 9 188 - -
Cca03g01723 216 PANTHER CYTOKININ RIBOSIDE 5'-MONOPHOSPHATE PHOSPHORIBOHYDROLASE 8 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01723 Cca-Chr3 36353322 36356527 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01723 K22522 - gmx:100785484 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00814 05 22506026 22509887 Cca03g01723 03 36353322 36356527 PCT