Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01716 ATGGTCGgagggagagagagagagagagaATCGCGAAAAGGATCTTACTATTACTTCATCGTATGTACACCAAATCCAATCCAACATCCTTCGTTATTACTATTATCCGTGGTCGTGAATTCCTTCGTTACAATGAAGGAACCCACGAGAAAACGGCGCATTAATAAGAACGAAGATGGTTCAAGCCagaagaagaaaaagaagaagGGACTGAAAAACATCCTCAGTCTCACAACACTTATGCTAGCGAGagatgaagaagaaatgaagaagaaaaagaagGACATGGAGGATGGTTACTACAGCGATGTGGAAGAGTCCAACGCAAAGAAGAGAAAAAAGGTCGGCGGCGGCGGTGAGTCGGGGAGTCAGCGGCGGGTTTGGGTGAAGGAGCGTTCGGGGGCGTGGTGGGAGGAGTGCGAGAAAGCTGAGTTTCCAGAAGAAGAGTTCCGGAAGGCGTTCAGAATGGGGAGGGTGACCTTTGGAAAGCTTTGCGAGGAGCTGAATTCGGCGATCGCTAAGGAAGACACGTCGCTGAGGAGCGTCATTCCGGTGCGGCAGAGGGTGGCGGTGTGTCTGTGGCGGTTGGCGACCGGCGACCCTCTGAGCGTGGTTTCGAGAAGATTCGGTTTGGGAATATCCACTTGCCACAAACTGGTTCTGGAAGTTTGCAGTGCGATAAGAACAGTGCTGATGCCCAAGTATTTGCAATGGCCTAACGTTGTTGGGTTGAGAGACATAAAGGGTGAGTTCGAGAACATTTCTGGGATCCCCAACGTTGTGGGGTCCATGTTGACTTCGCATGTTCCCATCATAGCGCCCAAGATGAGTGTGTCTGCGTACTTCAACAAGAGGCACACCGAGAGGAACCAAAAGACTTGTTACTCCGTTACGGTTCAGGGCGTGGTTGATCATAGAGGGGTTTTCACGGACGTCTGCATTGGGTGGCCAGGGTCCATGGCTGATGATGAGGTCTTGGAAAAGTCAGCGCTTTTTCACAGGGCCAGTAACGGAGGGCTTAATCTGAGTGGGGTTTGGGTTGTTGGGGGCTGTGGCTACCCTTTGTTGGATTGGGTTTTGGTGCCTTACACGCAGCGGAACCTCACCTGGACGCAGCACGCTTTCAATGAGAAGATTGGGGAGGTCAGGAGGGTCGCTAAGGACGCCTTTGGGAGGTTGAAGGCTAGGTGGGGGTGCCTTCAGAAGAGGACTGAGGTCAAGCTTCAAGATTTGCCTCTTGTGCTTGGGGCCTGTTGTGTGTTGCATAATATTTGCGAGTTGAAGAATGAGGAAATGGATCCTCACTTTTTCAGCATTCTtcatcatcatcatgatgatgatgatcttgatgatcatgctaaccTGGTGGAACCAGAGGTTGCCTCCAGATCTGTTAGCTCCTTCAAGGCCAGGGATGCTATCGCGCATTACCTTTTGCACCATGGACTTGCTGGCACTTCTTTTCTTTGA 1470 0.4748 MVGGRERERESRKGSYYYFIVCTPNPIQHPSLLLLSVVVNSFVTMKEPTRKRRINKNEDGSSQKKKKKKGLKNILSLTTLMLARDEEEMKKKKKDMEDGYYSDVEESNAKKRKKVGGGGESGSQRRVWVKERSGAWWEECEKAEFPEEEFRKAFRMGRVTFGKLCEELNSAIAKEDTSLRSVIPVRQRVAVCLWRLATGDPLSVVSRRFGLGISTCHKLVLEVCSAIRTVLMPKYLQWPNVVGLRDIKGEFENISGIPNVVGSMLTSHVPIIAPKMSVSAYFNKRHTERNQKTCYSVTVQGVVDHRGVFTDVCIGWPGSMADDEVLEKSALFHRASNGGLNLSGVWVVGGCGYPLLDWVLVPYTQRNLTWTQHAFNEKIGEVRRVAKDAFGRLKARWGCLQKRTEVKLQDLPLVLGACCVLHNICELKNEEMDPHFFSILHHHHDDDDLDDHANLVEPEVASRSVSSFKARDAIAHYLLHHGLAGTSFL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01716 489 MobiDBLite consensus disorder prediction 50 65 - -
Cca03g01716 489 Pfam DDE superfamily endonuclease 267 423 IPR027806 -
Cca03g01716 489 PANTHER UNCHARACTERIZED 59 488 IPR045249 -
Cca03g01716 489 PANTHER NUCLEASE 59 488 - -
Cca03g01716 489 MobiDBLite consensus disorder prediction 89 123 - -
Cca03g01716 489 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01716 Cca-Chr3 36266373 36268903 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01716 - - gmx:100809836 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01716 03 36266373 36268903 Cca03g01716 03 36266373 36268903 ECH