LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g01707	ATGAAGAAGGCGAAGAAGAGTGGCGAAGATAATGGGGGAAAATTGAGGGGCGCGGAGAGGTCAGCGTACTTCGCACGGCGAGAGACAGCGAAGGTGTTGAGAGTGGTTCTGGAGGGAGACGCCAAGCGCCGCGCCCTTGCCTCCATCAAATCCCTCGTCTATCAACCTTCCATTCGAAACAAGAAGGCCACCTTCGCTCTCCTCTGTCAAACCCTCAAACATCTTCCCATCATCAAGGATGTCCTCCAAGCTGCTTCCATTCTCAACACCAAGTGGAAGAGGCAGCCAGAATTGATTTATATCATTGTCTATGATATCCTTTTCGGCCAGGCGGTTTCACTTGTTGGTGATGCAGAGAAGTTCCTTATGCGCCACCAAGATGCCCTGCGTTCAACTCTCAAACAGCTTTTGTTGCAGAGAAATGTCAAGACAGTTAAACAGTTGATTGATCTGCATCATGGTCCTGATGTTTCTGTACCTCGATATGTTCGTGTCAATACACTTAAACTGGATGTTGATTCTGCCTTTCTTGAACTTAAGAAACAATACTCGGTTCAAAAGGATAATTTACTGCCTGACTTGCTGATACTCCCTCCAGGCACTGATTTGCATGATCATCCTCTTGTCAAGAATGGAAGTATCTTTATGCAAGGTAAGGCAAGTTCTATGGCAGCACCAGCCCTTAGCCCTGAACCAGGATGGGAGGGGACACCGGGAAACAAAACTGTTCACCTTGCTGCCCTTATGAAGAGTAAGGGTAAGATTATAGCATGTGAGCTGCAAAAGGAAAGGATTAGGCGTTTGAAAGACACTATAAAGCTATCTGGTGCTTCTAACATTCAAGTCCTCAATGGGGATTTCTTGAGCATAAATCCCGAGGATCCTTCATATTCTAAGGTAAAAGCTATTCTCTTGGATCCTTCCTGCTCTGGTTCTGGTACTGCTGCTTCAAGACTGGACCATCTACTCCCATCTAAAGCAGAAGGTATGGATACGGATATGGGAAGATTGAACAAGCTTGCAACTTTCCAGAGAAAGGCTCTTCAGCATGCTTTACTTTTTCCAGCTGTTGAAAGAATTGTATACAGTACATGTTCAATCAACCAGATTGAGAATGAAGATGTCATCAAATCTGTTGTGCCTATAGCCGAATCATATGGATTTCAACTGGCAAAGCCCTTCCCCGAGTGGGAATGCCGTGGTCTTCCAGTGTTTGAAGGCTCTGAATGCTTGGTTCGGACAGATCCTGCTACGCATGGCGAGGGTTTCTTCATTGCTTTGTTTGCTAGGAAAGATGCTTACTTGTGGTCGAACAAAAAAGAAACTAGAATTTCCCACAGCCCTTCCAAAATTAAAAACGCACGAAGAAAGAAGAAAACTATACCGTTCGTTAGCACCAACCCGTTCAGAATGTGGCTATATGATCAACTGAATTATCGTAGCGGTCGAAATTGTAGGTAG	1461	0.4504	MKKAKKSGEDNGGKLRGAERSAYFARRETAKVLRVVLEGDAKRRALASIKSLVYQPSIRNKKATFALLCQTLKHLPIIKDVLQAASILNTKWKRQPELIYIIVYDILFGQAVSLVGDAEKFLMRHQDALRSTLKQLLLQRNVKTVKQLIDLHHGPDVSVPRYVRVNTLKLDVDSAFLELKKQYSVQKDNLLPDLLILPPGTDLHDHPLVKNGSIFMQGKASSMAAPALSPEPGWEGTPGNKTVHLAALMKSKGKIIACELQKERIRRLKDTIKLSGASNIQVLNGDFLSINPEDPSYSKVKAILLDPSCSGSGTAASRLDHLLPSKAEGMDTDMGRLNKLATFQRKALQHALLFPAVERIVYSTCSINQIENEDVIKSVVPIAESYGFQLAKPFPEWECRGLPVFEGSECLVRTDPATHGEGFFIALFARKDAYLWSNKKETRISHSPSKIKNARRKKKTIPFVSTNPFRMWLYDQLNYRSGRNCR	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g01707	486	CDD	AdoMet_MTases	238	319	-	-
	Cca03g01707	486	Gene3D	Sun protein; domain 3	151	216	-	-
	Cca03g01707	486	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	151	431	IPR001678	GO:0008168
	Cca03g01707	486	PANTHER	NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	16	440	IPR023267	GO:0001510
	Cca03g01707	486	PANTHER	BNAA09G04380D PROTEIN	16	440	-	-
	Cca03g01707	486	Gene3D	Vaccinia Virus protein VP39	217	436	IPR029063	-
	Cca03g01707	486	PRINTS	RNA (C5-cytosine) methyltransferase signature	301	313	IPR023267	GO:0001510
	Cca03g01707	486	PRINTS	RNA (C5-cytosine) methyltransferase signature	208	222	IPR023267	GO:0001510
	Cca03g01707	486	PRINTS	RNA (C5-cytosine) methyltransferase signature	413	430	IPR023267	GO:0001510
	Cca03g01707	486	PRINTS	RNA (C5-cytosine) methyltransferase signature	357	373	IPR023267	GO:0001510
	Cca03g01707	486	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	159	430	IPR029063	-
	Cca03g01707	486	Pfam	16S rRNA methyltransferase RsmB/F	237	428	IPR001678	GO:0008168

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g01707	K15264		-	gmx:100775620	827.78

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca03g01707	03	36145351	36150361	Cca03g01707	03	36145351	36150361	ECH