Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01706 ATGGATATCAGGTTGATGGATTTGGATTCTCCATTGTTCAACACATTGCACCGAATTATGGATTTGACGGAGGACGCTGAGAAGAACTTGAATGCGCCAACGAGGACATACGTGCGCGACGCAAAGGCAATGGCTGCAACACCTGCTGACGTGAAGGAGTACCCTAACTCATACGTGTTCGTGATCGACATGCCTGGGTTGAAATCTGGGGACATTAAGGTGCAGGTGGAGGAGGACAACGTGCTTCTCATAAGCGGTGAGAGGAAGAGAGAGGAGGAGAAAGAAGGGAGCAAGTATCTGAGGATGGAGAGGAGGGTTGGAAAGTTCATGCGTAAGTTCACGCTTCCTGAGAATGCCAACACGGATGCCATATCTGCGGTCTGCCAAGACGGTGTTCTCACTGTCACTGTCAACAAGTTGCCTCCTCCTGAGCCCAAGAAGCCAAAGACTATTGAGGTTAAGATCGCTTGA 471 0.4989 MDIRLMDLDSPLFNTLHRIMDLTEDAEKNLNAPTRTYVRDAKAMAATPADVKEYPNSYVFVIDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGSKYLRMERRVGKFMRKFTLPENANTDAISAVCQDGVLTVTVNKLPPPEPKKPKTIEVKIA 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01706 156 Pfam Hsp20/alpha crystallin family 50 154 IPR002068 -
Cca03g01706 156 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 40 156 IPR002068 -
Cca03g01706 156 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 8 155 - -
Cca03g01706 156 PANTHER 18.0 KDA CLASS II HEAT SHOCK PROTEIN 8 155 - -
Cca03g01706 156 Gene3D - 6 155 IPR008978 -
Cca03g01706 156 SUPERFAMILY HSP20-like chaperones 14 148 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01706 Cca-Chr3 36143048 36144220 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01706 K13993 - gmx:111605749 279.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01706 03 36143048 36144220 Cca03g01706 03 36143048 36144220 ECH