Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01702 ATGGGTGAGCTATCCCGGAACGGCGCCATAGCGAAAGCTTGTTCAGGCACAGGACCTCCATTAATCCGAAACCTGTCCCTGGTAACCTCCATTACCACAATCCTCCAAAACCTAAACCCCCAAAACCCAGACTTGTCACCCCTTAAAAAGTTCTCCCCTCACCTCACCCCAAACGTGGTCATCCACGTCATCAAGAACCTAAACAGGCACCCCCACCACGCCCTTCACTTCTTCAACTGGGCCTCCGATCActactcccaccccccctcctgctacgccgccatcacccacctactcctctcccactccctcttctccaccgcctactccctcctccgccGCTCCAACAACCTCTCCGACTCCCTCATCTGCACATTCATCAACGCCCTCGGCCACCGCGGCGACATCAGAGGCGCCATCCACTGGTTCCACAAAGCCAACACCTTTCTCAAAGGACGCTGCTTGTTCTCCTGCAACGCCGTCTTGGCTGTTCTCGTGAGGGCCAACCGTGTAAACATCGCCAAGGCCATCTACGATCAGGTCCTCGCACAAGGTTTGCTCCGACCCGATGTCTACACTCACACCACCGTCATTCGCGGCTTGTGCAAAGTGGGCTTGGTCGAGAGTGCGCGCAAGGTGTTCGACGAAATGCGCTGCCAACCCAACATGGTTACTTACAACACCTTGATCCACGGCTTTTGCAGGAAGGGTGACATGGAGGCTGCAAAGAGCGTTTTTGACAGGTTGGTGGGGAGTGAGAGTTGCAAGCCCGATGTGGTGAGTTTCACCACTTTGATTGATGGGTATTCCAAGAAAGGGGAGCTCCGTCAGGCGCTGAGGTGGTTGGAGGAGATGGTGCAACGAGGGTGTTCCCCCAACGTTGTGACCTACAATGCGTTGATTGAAGGTCTTTGCTTGAGCGGGGAAGTGGATGGGGCCAAGAAGATGATGACCAGGATGCGGTTGAATGGTGTAAGAGACAATGTGGCCACGGACACGAGCATGTTGAAGGGGTTTTGCATTGTGGGGAAGTCTGATGATGCTTTTAAGCATCTGAGGGGAATGATTAGTCGCGGGAGGAAGCCGGATGTGAAAGCGTATAGTGTTGTTGTCAATGAGTATTGCAAGATTGGAAAACCAAGTGAGGCAGTGTCCCTTCTGAGGGAAATGGTGGCGACGGGTGTTAAGCCAAGTGTGTCGAGTTTTAATGCGGTGTTTAGAGTTTTTGTGGATGAGGGGAAGGTTGATGAGGGATTTTTTCTTTTGAAGCAGATGCCTCGGATGGGATGCTCACCCAACTTCTTGTCTTATAGCATAGTTGTATGTGGTCTTTGTAAAGTGAAGGGTAGGATGCAACAAGTTGAAGAGCTTGTTTCGGACATGGTTCGGAATGGACATAACCTGGATGCCACTGTGTATAACTGCTTGCTCGAGGGATATTGTGAGGAAGGGGATGAAGAAATGGCACTAAAGACGGTTTATGACATAATGGACAAGAACTTTGTGATCAACCAAGACACTTTCTGCAGTTTTTTGAAGGGGTTGTGTGCGAAGGGAAAATTGAAAGAGGCGGAGACACTGTTTGGGGAGATGCAGAGGAGATCCCAGTTGAGTGGAAAACTTGAGTCAACCGGAGGAATATTAACGTGA 1650 0.4794 MGELSRNGAIAKACSGTGPPLIRNLSLVTSITTILQNLNPQNPDLSPLKKFSPHLTPNVVIHVIKNLNRHPHHALHFFNWASDHYSHPPSCYAAITHLLLSHSLFSTAYSLLRRSNNLSDSLICTFINALGHRGDIRGAIHWFHKANTFLKGRCLFSCNAVLAVLVRANRVNIAKAIYDQVLAQGLLRPDVYTHTTVIRGLCKVGLVESARKVFDEMRCQPNMVTYNTLIHGFCRKGDMEAAKSVFDRLVGSESCKPDVVSFTTLIDGYSKKGELRQALRWLEEMVQRGCSPNVVTYNALIEGLCLSGEVDGAKKMMTRMRLNGVRDNVATDTSMLKGFCIVGKSDDAFKHLRGMISRGRKPDVKAYSVVVNEYCKIGKPSEAVSLLREMVATGVKPSVSSFNAVFRVFVDEGKVDEGFFLLKQMPRMGCSPNFLSYSIVVCGLCKVKGRMQQVEELVSDMVRNGHNLDATVYNCLLEGYCEEGDEEMALKTVYDIMDKNFVINQDTFCSFLKGLCAKGKLKEAETLFGEMQRRSQLSGKLESTGGILT 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01702 549 Gene3D Tetratricopeptide repeat domain 66 186 IPR011990 GO:0005515
Cca03g01702 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Cca03g01702 549 Pfam PPR repeat family 328 376 IPR002885 -
Cca03g01702 549 Pfam PPR repeat family 257 305 IPR002885 -
Cca03g01702 549 Pfam PPR repeat family 155 203 IPR002885 -
Cca03g01702 549 Pfam PPR repeat family 397 446 IPR002885 -
Cca03g01702 549 Pfam PPR repeat family 469 516 IPR002885 -
Cca03g01702 549 Pfam PPR repeat 218 248 IPR002885 -
Cca03g01702 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Cca03g01702 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Cca03g01702 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 257 IPR002885 -
Cca03g01702 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 468 IPR002885 -
Cca03g01702 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 220 IPR002885 -
Cca03g01702 549 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 26 538 - -
Cca03g01702 549 TIGRFAM PPR: pentatricopeptide repeat domain 192 219 IPR002885 -
Cca03g01702 549 TIGRFAM PPR: pentatricopeptide repeat domain 401 433 IPR002885 -
Cca03g01702 549 TIGRFAM PPR: pentatricopeptide repeat domain 366 399 IPR002885 -
Cca03g01702 549 TIGRFAM PPR: pentatricopeptide repeat domain 472 504 IPR002885 -
Cca03g01702 549 TIGRFAM PPR: pentatricopeptide repeat domain 224 259 IPR002885 -
Cca03g01702 549 TIGRFAM PPR: pentatricopeptide repeat domain 260 294 IPR002885 -
Cca03g01702 549 TIGRFAM PPR: pentatricopeptide repeat domain 295 325 IPR002885 -
Cca03g01702 549 TIGRFAM PPR: pentatricopeptide repeat domain 507 534 IPR002885 -
Cca03g01702 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Cca03g01702 549 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 26 538 - -
Cca03g01702 549 SUPERFAMILY HCP-like 72 317 - -
Cca03g01702 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Cca03g01702 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Cca03g01702 549 Gene3D Tetratricopeptide repeat domain 464 535 IPR011990 GO:0005515
Cca03g01702 549 Gene3D Tetratricopeptide repeat domain 393 463 IPR011990 GO:0005515
Cca03g01702 549 Gene3D Tetratricopeptide repeat domain 187 250 IPR011990 GO:0005515
Cca03g01702 549 Gene3D Tetratricopeptide repeat domain 251 320 IPR011990 GO:0005515
Cca03g01702 549 Gene3D Tetratricopeptide repeat domain 321 392 IPR011990 GO:0005515
Cca03g01702 549 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01702 145 540 Glycosyltransferase AT1G05670 31.078 2.79e-65 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01702 - - gmx:100802054 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01702 03 36123151 36125120 Cca03g01702 03 36123151 36125120 ECH