Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01698 atgagagcattcgcgtcatcgtcactgattaacttgaaatctttcactctacaccacactcccaCCTTTAAGAACCctcgctctctatctctttctctcccctctctctctccctTCATTTCCCCTTCTCCAATCATGGCTGCATCCTTCAACTCCGAACGCGCCCGCGCTCCACCCGCCATTCCCATGCCCCCTCCTCCTCTCACCAAGTTCAAAATCGGTCTCTGTCAACTCTCCGTCACTCCCGACAAGGACAGAAACATCGCCCACGCGCGCACCGCCATTCAGGACGCTGCATCCAAGGGCGCTCAACTTGTTCTCTTGCCTGAAATTTGGAACAGTCCTTATTCCAATGACAGTTTCCCCGTCTACGCCGAGGATATCGACGCCGGCGCCGGCGCTTCTCCTTCCACCGCCATGCTCTCCGAACTCTCGCGTCTCTTAAAAATCACTATCGTCGGCGGTTCCATTCCAGAACGTTCCGGAGGTCGCTTGTACAACACTTGCTGCGTCTTTGGCACCGATGGAAAACTACTCGCCAAGCACCGGAAGATACATCTTTTTGATATCGATATCCCTGGGAAGATTACCTTTGTTGAGTCAAAAACTCTTACTGCTGGGGAGACTCCGACCATTGTGGACACAGAGGTTGGACGCATTGGCATAGGCATCTGTTATGACATCAGGTTTCCAGAACTAGCTATGATATATGCTGCTAGAGGGCCATTAGCATCACAGAGTAGCAATTTTGATTTTTTGGGGGTGGATAGAAGAGGAGGGTTCATATACATAGGGCAACACTGCCTGTGTATTTCTCATTTCAGGAATATACTAAAAGAAATTTCAAATTCATATTCCTTGCTTTTGACTTCAGGTGCTCACTTACTCTGCTATCCTGGTGCATTTAACATGACAACTGGACCATTACATTGGGAGTTGTTGCAGAGGTCAAGGGCTACAGATAATCAGTTATATGTGGCTACCTGTTCACCTGCCCGGGATACTGGATCTGGTTATGTGGCTTGGGGCCACTCTACTCTTGTTGGACCATTTGGAGAAGTTCTGGCTACTACAGAACATGAGGAGGCAATCATCATAGCAGAAATTGATTATTCAATATTGGAGCAGAGAAGGACAAATCTTCCTGTAACTAAGCAAAGACGAGGTGATCTTTACCAGTTGGTGGATTTTCAGAGGCTGAATTCCCAGTGA 1212 0.4398 MRAFASSSLINLKSFTLHHTPTFKNPRSLSLSLPSLSPFISPSPIMAASFNSERARAPPAIPMPPPPLTKFKIGLCQLSVTPDKDRNIAHARTAIQDAASKGAQLVLLPEIWNSPYSNDSFPVYAEDIDAGAGASPSTAMLSELSRLLKITIVGGSIPERSGGRLYNTCCVFGTDGKLLAKHRKIHLFDIDIPGKITFVESKTLTAGETPTIVDTEVGRIGIGICYDIRFPELAMIYAARGPLASQSSNFDFLGVDRRGGFIYIGQHCLCISHFRNILKEISNSYSLLLTSGAHLLCYPGAFNMTTGPLHWELLQRSRATDNQLYVATCSPARDTGSGYVAWGHSTLVGPFGEVLATTEHEEAIIIAEIDYSILEQRRTNLPVTKQRRGDLYQLVDFQRLNSQ 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01698 403 Pfam Carbon-nitrogen hydrolase 290 374 IPR003010 GO:0006807
Cca03g01698 403 Pfam Carbon-nitrogen hydrolase 73 241 IPR003010 GO:0006807
Cca03g01698 403 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 71 371 IPR003010 GO:0006807
Cca03g01698 403 SUPERFAMILY Carbon-nitrogen hydrolase 64 241 IPR036526 -
Cca03g01698 403 PANTHER OMEGA-AMIDASE, CHLOROPLASTIC-LIKE 290 402 - -
Cca03g01698 403 PANTHER OMEGA-AMIDASE, CHLOROPLASTIC-LIKE 38 241 - -
Cca03g01698 403 Gene3D - 68 397 IPR036526 -
Cca03g01698 403 ProSitePatterns Uncharacterized protein family UPF0012 signature. 221 241 IPR001110 -
Cca03g01698 403 PANTHER NITRILASE-RELATED 38 241 - -
Cca03g01698 403 PANTHER NITRILASE-RELATED 290 402 - -
Cca03g01698 403 CDD nit 72 388 IPR045254 GO:0016811
Cca03g01698 403 SUPERFAMILY Carbon-nitrogen hydrolase 287 395 IPR036526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01698 Cca-Chr3 36098886 36103537 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01698 K13566 - gmx:100817195 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01698 03 36098886 36103537 Cca03g01698 03 36098886 36103537 ECH