Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01682 ATGCTAGCTTACCTCGACGCCGAATCAACCCAACACCCCGACGCCGGAATAGCCAACAAGGACTTCGGCGGCATCAACTCCGCCAAACCCTTCGCCCTCATCAGGCCCTCCGCCGCCGCCCACGTCGCCCGAGTCGTCCAATTGGCAGCTGCCTCGCCTAGTCTGACGGTGGCGGCGCGCGGCAACGGCCACTCCGTGAACGGGCAGGCCATGGCGGAGCAGGGCCTGGTTCTGGACATGCGCTCCATGAAGGAGAAGGAGCCTTTCCAGATTCTCTGGGTAGAAGGCGCGCCCTGCGTGGACGTTTCGGGAGGGGCATTATGGGAAGACCTCCTTAAACGCTGCGTTTCGGAGTTCGCACTCGCCCCGAGGTCCTGGACGGATTATCTCAGTTTAACGGTTGGCGGGACGCTCTCCTACGCTGGCGTCAGCGGTCAAACATTCCGTTACGGTCCTCAGACATCCAACGTAACGGAATTGGAGGTTGTAACCGGAAAAGGCGAAACGCTGTGCTGCTCCCAAACGCAAAACTCTGAGCTTTTCTTCGGAGCGCTTGGTGGTTTGGGACAGTTCGGTATTATTACAAGGGCCAGAATCCTTCTTCAAGAAGCTCCAGATATGGTGAGGTGGATAAGAGTGGTTTACTCTGAATTTGAGGACTATGCCGGGGATGCAGAGTCGCTGGTGCAATTAGAGAAATGTTTTGATTACGTGGAAGGCTTCGTTTTCGTGAACAATGAGGACCGGGCCAATGGATGGCCCACGGTGCCGTTGGGCCCGGAACAGCTGTTCGACCCGCTTCGTATTCCTTCCAGTGCTGGCCCTGTTTTGTATTGCTTGGAGGTCGCTCTTCACTATCGTAAAACGGATCTTCCTTCCCGTGTTGATACGGATGTGGGTCGAATGCTTGGACGGTTACGATTCATTGAGGGTCTCAAGTTCGAGGTGGATGTGACGTACATGGAGTTCTTGCTACGTGTAAAGCGTGTGGAGGAGCAAGCAAAAGCAAACGGCACCTGGGATGCACCTCACCCTTGGCTCAATCTGTTCGTCTCCAACTCCCACATCCTTGATTTTGATCGTGAGGTCTTCAAGAAGATTCTCAAGGACGGGGTCGATGGCCCCATTTTAGTCTACCCGCTCCTGCGAAACAAGTGGGATAGTCGTCACTCTGTGGTGGTGCCGGACAGCGATATCTTCTACATAGTAGCGTTGCTCCGATTCAGTCCAGCACCCCCAAAGGGCCCACCAGCGGAGCTCTTGGTGGCGCAAAACAATGAGATTATAGAGTTCTGCACCCGCAGAGGCCTTGATTTCAAGCTATACTTTCCTCACTACCACTCACGGGAGGATTGGATCAAACACTTTGGGAATCAATGGCCCAGATTTTTGGAGCGAAAGGCCACTTTTGATCCCCTGGCTATCCTTGCACCAGGGCAGAAAATTTTCTCTAGAACCTCTCAACCTCATTCTATCATATAA 1482 0.5398 MLAYLDAESTQHPDAGIANKDFGGINSAKPFALIRPSAAAHVARVVQLAAASPSLTVAARGNGHSVNGQAMAEQGLVLDMRSMKEKEPFQILWVEGAPCVDVSGGALWEDLLKRCVSEFALAPRSWTDYLSLTVGGTLSYAGVSGQTFRYGPQTSNVTELEVVTGKGETLCCSQTQNSELFFGALGGLGQFGIITRARILLQEAPDMVRWIRVVYSEFEDYAGDAESLVQLEKCFDYVEGFVFVNNEDRANGWPTVPLGPEQLFDPLRIPSSAGPVLYCLEVALHYRKTDLPSRVDTDVGRMLGRLRFIEGLKFEVDVTYMEFLLRVKRVEEQAKANGTWDAPHPWLNLFVSNSHILDFDREVFKKILKDGVDGPILVYPLLRNKWDSRHSVVVPDSDIFYIVALLRFSPAPPKGPPAELLVAQNNEIIEFCTRRGLDFKLYFPHYHSREDWIKHFGNQWPRFLERKATFDPLAILAPGQKIFSRTSQPHSII 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01682 493 Gene3D - 80 206 IPR016169 -
Cca03g01682 493 SUPERFAMILY FAD-linked oxidases, C-terminal domain 205 483 IPR016164 GO:0003824|GO:0050660
Cca03g01682 493 Gene3D - 18 484 IPR016167 -
Cca03g01682 493 PANTHER CYTOKININ DEHYDROGENASE 7 11 489 - -
Cca03g01682 493 SUPERFAMILY FAD-binding/transporter-associated domain-like 13 202 IPR036318 GO:0050660
Cca03g01682 493 Gene3D - 208 442 IPR016170 -
Cca03g01682 493 Pfam FAD binding domain 32 172 IPR006094 GO:0050660
Cca03g01682 493 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 205 483 IPR015345 GO:0009690|GO:0019139|GO:0050660
Cca03g01682 493 PANTHER GULONOLACTONE OXIDASE 11 489 - -
Cca03g01682 493 ProSiteProfiles PCMH-type FAD-binding domain profile. 26 204 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01682 Cca-Chr3 35946369 35949859 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01682 K00279 - gmx:100795849 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01682 03 35946369 35949859 Cca03g01682 03 35946369 35949859 ECH