Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01680 ATGTCGTTTCACGAAATGGAGAGGGATTCGTCTAACCGGCGTCGTTCCAATGGAGAGAGCAGTTCAGCTTCGCCCGAGGACACTCGTCGGAAGCGTGCGAAGAATTTTTGCTTAAAAGACTCTCATTCTGTAATTGGGAATTCCTCGAATACTGGGGAATCCAGTGCTTCAGTTGAATGCGGGGATTATGATGGTTTTCAAGGATCGTCTCTGCCATCGAATGGTGACGTTCCTAAGTTGATGTCTGCTGGTGAGGAGAGTAACTTCGATGAAGGATATGACAGTGACATTTCAAAAGTGGATGATCTAGAGGTCAAGATGGATCTTACGGATGATTTATTGCATATGGTTTTCTCGTTTCTGGATCATCCCAATCTCTGCAAAGCTGCCAGGGTTTGTAAGCAGTGGCGAACTGCTAGTGCTCATGAAGACTTCTGGAAGAGTTTAAATTTTGAAGATCGGAACATATCTGTAGAGCAATTTGAGGACATCTGTAGGCGTTATCCTAATATCACAGCAATCCGGATGTCAGGTCCTTCCACTTACCAGCTTGTCATGAAGGCCATCTCTTCGTTAAGAAATCTTGAGGCTTTAACATTGGGAAGAGGACATATAATGGACAATTTTTTCCATGCTTTAGCCGATTGTTCTATGTTGAGAAGACTGAGCATCAATGATGCTATACTTGGCAGTGGCATCCAGGAGATATCAGTTAATCATGATAGGTTGTGCCATCTCCAGTTGACTAAATGCCGTGTGATGCGTATAGCAGTCAGGTGCCCACAGCTTGAAACTATGTCATTGAAGCGCAGTAACATGGCACAAACTGTGCTCAGTTGCCCTCTTTTACAAGAGCTTGATATTGCTTCTTGCCACAAACTTCCTGATTCTGCTATTCGTTCAGCTGTTACATCATGCCCACAATTAGTTTCTTTGGACATGTCTAATTGTTCGAGTGTTAGTGATGAGACATTGCGGGAAATATCCCAGAATTGTGCCAACCTTAGTTTTCTTGATGCATCGTACTGCCCAAATGTATCCTTGGAGAATGTTAGACTGCCAATGTTAACAGTTCTGAAGCTTCATAGTTGTGATGGCATCGCCTCAGTGGCTGCAATAGCTTATAGTTCTATGTTGGAGGTTTTGGAGCTTGATAATTGTAGCCTATTGACATCAGTGTCTTTAGATCTTCCCCGCTTGCAGAATATTAGATTGGTTCATTGTCGCAAATTTGCTGATTTGAACTTGATGACTCCAATGCTTTCTTCTATTTTGGTGTCCAATTGCCCTGTGCTCGAGAAGATCAACATCACTTCAAATTCACTTCAAAAATTAACAATACCAAAGCAGGACAACTTAATCACATTAGCTCTGAAATGCCAATCTTTACAAGAAGTGGATCTCTCGGAGTGTGAATCTTTGACTAACAACGTATGCAATGTTTTTAATGGTGGAGGATGCCCAATGTTAAAATCATTAGTTCTTGATAATTGTGAGGGTTTGACATCAGTTCAATTCATCAGTACCTCTTTAATCAGTCTTTCGCTTGGTGGTTGCCGGGCAATAACTAATCTTGATCTCAATTGCCCTAAGCTAGAGAAAGTAATTTTGGATGGTTGTGATCATTTGGAAAGTGCATCATTTTGTCCAGTCGGTCTTTCATCTCTCAATTTAGGAATATGTCCGAAATTGAACACACTCCGCATTATAGCACCAATTATGATTTCTCTTGAGCTGAAAGGATGTGGAGTACTATCTAAAGCATCCATTGATTGTAAACTCTTAACATCTCTTGATGCTTCCTTTTGCAGTCGACTAACGGATGACTGCTTGTCCGCAACAGCTCTCTCATGCCCACTGATTGAATCATTGATATTAATGTCATGCCCGTCAATCGGTGAACGTGGTCTTCGATCTCTATGTTGTCTTAAAAATTTGACTGTTCTCGACTTATCATACACTTTCTTGGTGAACTTGCAGCCCGTTTTTGATTCTTGTTTGCAACTAAAGGTGTTAAAGCTTCAGGCATGCAAATATCTCACTGACACATCGCTTGAACCTCTTTACAAAGGAGGTGCTTTACCAGCGCTACAGGAGTTGGACTTGTCTTATGGAACTCTCTGTCAGTCAGCCATAGATGAGCTTCTTGCTTGCTGCACAAACCTCACTCATGTGAGCTTGAATGGCTGTGTGAATATGCATGATTTTAATTGGGGATGCAGTCCTGGGCAGATTGACAATATCCCTGCTGTAAACACCCCATATGAAGAAAGATCTAATGAGAACATCCCTGAATCAAGTGAGCAATCCACTCGCTTACTGCAAAACCTCAACTGTGTTGGATGTCCAAATATCAGGAAGGTTGTCATTCCATTGAAGGCAAATTGTTGTCATTTGTTATTTTTAAGCCTTTCGCTCTCTGCAAATTTGAAAGAGGTTGATGTTACTTGTCCCAACCTATGCTTTCTTAATTTAAGCAATTGTTCCTCTCTAGAAATTTTGAAGCTAGAGTGTCCAAGATTGACCAGTCTATTCCTTCAGTCTTGCAATATTGACGAGGAAGCTGTTGAAGCTGCTATATCAAAATGCACTATGCTGGAAAATCTTGATGTTCGTTGTTGTCCAAAGATAAGCTCAATGAGCATGGGAAGATTGCGCGCAGTTTGTCCTAGTTTGAAGCGTACATTCAGCAGTCCGTCAACTTTGTTACCTTGA 2715 0.4144 MSFHEMERDSSNRRRSNGESSSASPEDTRRKRAKNFCLKDSHSVIGNSSNTGESSASVECGDYDGFQGSSLPSNGDVPKLMSAGEESNFDEGYDSDISKVDDLEVKMDLTDDLLHMVFSFLDHPNLCKAARVCKQWRTASAHEDFWKSLNFEDRNISVEQFEDICRRYPNITAIRMSGPSTYQLVMKAISSLRNLEALTLGRGHIMDNFFHALADCSMLRRLSINDAILGSGIQEISVNHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQTVLSCPLLQELDIASCHKLPDSAIRSAVTSCPQLVSLDMSNCSSVSDETLREISQNCANLSFLDASYCPNVSLENVRLPMLTVLKLHSCDGIASVAAIAYSSMLEVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFADLNLMTPMLSSILVSNCPVLEKINITSNSLQKLTIPKQDNLITLALKCQSLQEVDLSECESLTNNVCNVFNGGGCPMLKSLVLDNCEGLTSVQFISTSLISLSLGGCRAITNLDLNCPKLEKVILDGCDHLESASFCPVGLSSLNLGICPKLNTLRIIAPIMISLELKGCGVLSKASIDCKLLTSLDASFCSRLTDDCLSATALSCPLIESLILMSCPSIGERGLRSLCCLKNLTVLDLSYTFLVNLQPVFDSCLQLKVLKLQACKYLTDTSLEPLYKGGALPALQELDLSYGTLCQSAIDELLACCTNLTHVSLNGCVNMHDFNWGCSPGQIDNIPAVNTPYEERSNENIPESSEQSTRLLQNLNCVGCPNIRKVVIPLKANCCHLLFLSLSLSANLKEVDVTCPNLCFLNLSNCSSLEILKLECPRLTSLFLQSCNIDEEAVEAAISKCTMLENLDVRCCPKISSMSMGRLRAVCPSLKRTFSSPSTLLP 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01680 904 Gene3D Ribonuclease Inhibitor 660 748 IPR032675 -
Cca03g01680 904 Gene3D Ribonuclease Inhibitor 751 899 IPR032675 -
Cca03g01680 904 MobiDBLite consensus disorder prediction 1 35 - -
Cca03g01680 904 SUPERFAMILY F-box domain 108 139 IPR036047 GO:0005515
Cca03g01680 904 MobiDBLite consensus disorder prediction 1 15 - -
Cca03g01680 904 SMART LRR_CC_2 863 888 IPR006553 -
Cca03g01680 904 SMART LRR_CC_2 487 517 IPR006553 -
Cca03g01680 904 SMART LRR_CC_2 280 305 IPR006553 -
Cca03g01680 904 SMART LRR_CC_2 306 331 IPR006553 -
Cca03g01680 904 SMART LRR_CC_2 529 554 IPR006553 -
Cca03g01680 904 SMART LRR_CC_2 592 617 IPR006553 -
Cca03g01680 904 SMART LRR_CC_2 618 643 IPR006553 -
Cca03g01680 904 SMART LRR_CC_2 460 484 IPR006553 -
Cca03g01680 904 SMART LRR_CC_2 666 691 IPR006553 -
Cca03g01680 904 SMART LRR_CC_2 838 862 IPR006553 -
Cca03g01680 904 SUPERFAMILY L domain-like 329 546 - -
Cca03g01680 904 Gene3D Ribonuclease Inhibitor 102 364 IPR032675 -
Cca03g01680 904 Gene3D Ribonuclease Inhibitor 411 574 IPR032675 -
Cca03g01680 904 MobiDBLite consensus disorder prediction 70 93 - -
Cca03g01680 904 SUPERFAMILY L domain-like 585 894 - -
Cca03g01680 904 SMART fbox_2 109 149 IPR001810 GO:0005515
Cca03g01680 904 PANTHER OS10G0396666 PROTEIN 27 863 - -
Cca03g01680 904 Gene3D Ribonuclease Inhibitor 575 659 IPR032675 -
Cca03g01680 904 PANTHER OS10G0396666 PROTEIN 27 863 IPR044703 GO:0010252|GO:1905393
Cca03g01680 904 SUPERFAMILY RNI-like 131 392 - -
Cca03g01680 904 Pfam F-box-like 111 151 IPR001810 GO:0005515
Cca03g01680 904 ProSiteProfiles F-box domain profile. 103 149 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01680 Cca-Chr3 35925750 35931694 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01680 - - gmx:100786178 1466.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01680 03 35925750 35931694 Cca03g01680 03 35925750 35931694 ECH