Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01672 ATGGGTACTAAACTAGTATATTGGGCCATCATTGTATTATGGCTTACTTCATTTGAAGAAAATATGTTGCTTGTTAAGGGTGGTGGTTTTAATTACAAGGAGGCTCTCACCAAGTCCCTTATCTTCCTAGAGGCACAACGTTCAGGGAAACTCCCTAAAAATAATAGGGTGCCTTGGAGAGGAGACTCAGCACTCGATGATGGAAAGCACGTTAATGTGGACCTTGTTGGGGGATACTATGATGCAGGGGACAATGTGAAATATGGTCTCCCCATGGCTTTCACCGTTACTACTCTATCATGGGCTGCAATTTTTTACAAGTCAGAATTCCAAGCTGCAAACGAGTTGAATAATATTGAGGATGCCATTCGTTGGGGCACCGATTATTTTCTTAAAGCTAGTTCTCGACACAAGAGATTATATGTGGAGGTAGGGGACCCGGAAGATGATCATCATTGTTGGGCTCCACCGGAACATATGAAGACAAAGAGAACGGTTAAGAGGATTGATAGTAATACTCCCGGGACTGAGATTGCAGCTGAAACTGCTGCCGCAATGGCTGCTTCTTCCATTGTTTTCAGGGCCAAAGATCGTAAATATGCTCGTCTCCTTCTCAACAAAGCTAAATTGCTTTTCCATATGGCTAAAGAACATAAAGGAACCTACGATGGAGAGTGCCCCTTCTACTGCTCTTATTCCGGCTATCATGATGAACTGATGTGGGCATCCACGTGGCTATACATGGCTACCAGGAAGCCTATGTACTTGAAGTACATAAAAGAAGACACCATAAGTGCTAGTGTAGCAGAATTTAGTTGGGACCTTAAATATGCTGGAGCTCAAATCCTTCTCACCCAATTATATTTCGAAGGTGAAAAGAATATGGAAACATTCAAAAGCCACGGCGATAGTTTCGTATGCTCTGTCCTTCCCGAAAGTCCCTACCACCAGATTAACTTGTCTCCTGGTGGGTTTATTCATTTGAGAGATGGGGCGAACACGCAATATGCCACGAGCACGTCTTTCTTGTTAACTGTGTATAGTGATTTGCTTGCGAAACATAAGGAGAAAGTGAGTTGTGGAGACAAAAAGTTTGGGTCGTCGCATCTCCTTAATTTCGCTAAGAAACAGATGGATTACATACTAGGGAAAAACCCTGAAAAGAGATCGTACATGGTGGGATTTGGGAAGAACCCACCAACGCAGGCTCACCACAGAGGTGCTTCGGTGCCAACGTTGAAAAAGGGAGAAGAGGTGAATTGTGCGTTGAGCTTCGCGCAATGGTTACATAAAGATCAACCAAACCCTCATGAGCTAACTGGAGCCATTGTGGGTGGGCCTGATCGCTCCGACAAGTTCAACGACAAACGTTGGGACTCACCCAAGACTGAACCATGCACCTACGTCAATTCCCTCGCTGCTGGAGTTCTAGCCAAACTCGCATCCTTGCCTTGA 1455 0.4474 MGTKLVYWAIIVLWLTSFEENMLLVKGGGFNYKEALTKSLIFLEAQRSGKLPKNNRVPWRGDSALDDGKHVNVDLVGGYYDAGDNVKYGLPMAFTVTTLSWAAIFYKSEFQAANELNNIEDAIRWGTDYFLKASSRHKRLYVEVGDPEDDHHCWAPPEHMKTKRTVKRIDSNTPGTEIAAETAAAMAASSIVFRAKDRKYARLLLNKAKLLFHMAKEHKGTYDGECPFYCSYSGYHDELMWASTWLYMATRKPMYLKYIKEDTISASVAEFSWDLKYAGAQILLTQLYFEGEKNMETFKSHGDSFVCSVLPESPYHQINLSPGGFIHLRDGANTQYATSTSFLLTVYSDLLAKHKEKVSCGDKKFGSSHLLNFAKKQMDYILGKNPEKRSYMVGFGKNPPTQAHHRGASVPTLKKGEEVNCALSFAQWLHKDQPNPHELTGAIVGGPDRSDKFNDKRWDSPKTEPCTYVNSLAAGVLAKLASLP 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01672 484 Pfam Glycosyl hydrolase family 9 32 477 IPR001701 GO:0004553|GO:0005975
Cca03g01672 484 Gene3D - 27 484 IPR012341 GO:0005975
Cca03g01672 484 PANTHER ENDOGLUCANASE 16-RELATED 5 481 - -
Cca03g01672 484 SUPERFAMILY Six-hairpin glycosidases 29 482 IPR008928 GO:0005975
Cca03g01672 484 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 380 406 IPR018221 -
Cca03g01672 484 PANTHER ENDO-1,4-BETA-GLUCANASE 5 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01672 Cca-Chr3 35836068 35838632 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01672 21 482 Glycoside Hydrolase AT3G43860 69.697 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01672 K01179 - gmx:100811509 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01672 03 35836068 35838632 Cca03g01672 03 35836068 35838632 ECH