Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01671 ATGAAATCCTGCATGCCACCAATTACCAATTGGCCTTCGGTCAAAGTAGCTACTCAGTCAGGGGATATTCCACCTCCACATCTCTGCAAAAGATACCCTTTTGCTTCTTTTCAGAATATGGGCTTAGTCTGCAGCAGAAATCGCCAATATCGTGATGCTGATGCTGAAGAAAATGCTCAGGATGCAGAAATTGGAAGGAGAATTGAGTTAGAAACAAAGGCTGAAAAGCATATTCAGAAACTTCTGCTACTAGGTattattgatatttatttatttgttgatAATATGCAGATAAAACTCTTGTTTCAAACTGGCTTTGACGAGGCTGAGCTAAAAAGCTACATACCAGTCATTCATGCTAATGTGTATCAGACAATAAAAATACTGCATGATGGGTCAAAAGAGTTGGCGCAGAATCATGTTGATTCTTCAAAGTATGTGATATCTAACGAAAACCAGGACATTGGTGAAAAGCTCTCAGAAATTGGTGGTAGGCTAGATTATCCGCGTCTTACCAAGGAGCTTGCACAGGAAATAGAGACTCTGTGGGAGGATGCTGCAGTTCAGGAAACATATGCCCGTGGCAATGAACTCCAAGTTCCAGATTGTGCCCATTATTTCATGGGAAATTTGGAGAGGCTGTCTGAAGCAAATTATGTTCCCACAAAGGAGGATGTTTTGTATGCAAGAGTTCGTACAACTGGTGTTGTTGAGATCCAGTTCAGCCCTGTTGGAGAAAATAAGAGAAGTGGCGAAGTCTATAGACTCTTTGATGTTGGTGGCCAGAGAAATGAGAGGAGAAAATGGATCCATCTTTTTGAAGGAGTTACAGCTGTAATATTCTGTGCTGCAATTAGCGAGTATGATCAAACACTTTATGAGGATGAAAACAAGAACAGAATGATGGAAACTAAGGAACTTTTTGAGTGGGTCCTGAAACAACCGTGTTTTGAGAAAACATCCTTCATGTTATTTTTAAACAAGTTTGACATATTTGAAAAGAAGATCCTGAAAGTTCCGCTTAATGCATGTGAGTGGTTCAAAGATTACCAGCCAGTTTCAACAGGAAAACAAGAGATTGAACATGCGTACGAGTTTGTTAAGAAAAAGTTTGAGGAATTGTACTTCCAGAGCACTGCTCCTGACCGTGTAGATCGTGTCTTCAAGGTGTATCGGACGAGTGCCCTTGATCAGAAGCTTGTGAAGAAGACTTTCAAGCTTGTTGATGAGACTTTGAGACGGAGGAATCTCTTTGAAGCTGGCTTATTATGA 1272 0.4009 MKSCMPPITNWPSVKVATQSGDIPPPHLCKRYPFASFQNMGLVCSRNRQYRDADAEENAQDAEIGRRIELETKAEKHIQKLLLLGIIDIYLFVDNMQIKLLFQTGFDEAELKSYIPVIHANVYQTIKILHDGSKELAQNHVDSSKYVISNENQDIGEKLSEIGGRLDYPRLTKELAQEIETLWEDAAVQETYARGNELQVPDCAHYFMGNLERLSEANYVPTKEDVLYARVRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLYEDENKNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKILKVPLNACEWFKDYQPVSTGKQEIEHAYEFVKKKFEELYFQSTAPDRVDRVFKVYRTSALDQKLVKKTFKLVDETLRRRNLFEAGLL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01671 423 SUPERFAMILY Transducin (alpha subunit), insertion domain 106 231 IPR011025 GO:0007165
Cca03g01671 423 Pfam G-protein alpha subunit 62 411 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca03g01671 423 ProSiteProfiles G-alpha domain profile. 77 423 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca03g01671 423 Gene3D - 107 232 IPR011025 GO:0007165
Cca03g01671 423 SMART galpha_1 58 422 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca03g01671 423 Gene3D - 97 411 IPR027417 -
Cca03g01671 423 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 40 423 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca03g01671 423 PRINTS Alpha G protein (transducin) signature 254 271 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca03g01671 423 PRINTS Alpha G protein (transducin) signature 322 331 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca03g01671 423 PRINTS Alpha G protein (transducin) signature 276 304 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca03g01671 423 PRINTS Alpha G protein (transducin) signature 219 241 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca03g01671 423 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 40 423 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca03g01671 423 CDD G-alpha 79 417 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cca03g01671 423 PRINTS Plant G protein alpha subunit signature 155 169 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca03g01671 423 PRINTS Plant G protein alpha subunit signature 375 387 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca03g01671 423 PRINTS Plant G protein alpha subunit signature 358 373 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca03g01671 423 PRINTS Plant G protein alpha subunit signature 131 145 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca03g01671 423 PRINTS Plant G protein alpha subunit signature 239 254 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca03g01671 423 PRINTS Plant G protein alpha subunit signature 66 75 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca03g01671 423 PRINTS Plant G protein alpha subunit signature 116 129 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca03g01671 423 PRINTS Plant G protein alpha subunit signature 309 320 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Cca03g01671 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 420 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01671 Cca-Chr3 35827390 35833768 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01671 K19729 - gmx:547804 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01671 03 35827390 35833768 Cca03g01671 03 35827390 35833768 ECH