Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01660 ATGGCAGCGGAAGACCGGTGGTGCGTGGTGACCGGAGGTCGGGGTTTCGCCGCTCGGCATTTGGTGGAAATGCTAATCCGGTACAACGAGTACGGCGTTCGCATCGCTGATTTGGAAGCCAGCGTTGTTCTCGAGCCCGCCGAGCAGTTGGGGCTTCTCGGCCAGGCCTTACACTCTGGTCGGGCCCAATATGTCTCCGTCGATCTTCGCAACAAGGCCCAAGTATTAAAAGCATTGGAGGGAGTTGAGGTTGTGTTTCACATGGCTGCTCCGAACTCTTCCATCAACAACTACCAGCTTCATCATTCCGTCAACGTGCAAGGGACGAAGAACGTCATCGATGCTTGTTTGGAGCTCAATGTGAAGCGACTCATTTACACCAGCTCTCCCAGCGTGGTCTTCGATGGCGTGCATGGAATCTATAATGGAAACGAAACAATGCCTTATACGCATTCGCCTAATGATCATTATTCAGCGACGAAAGCCCAGGGTGAGGCATTGGTTATTAAAGCCAATGGGACTAATGGGCTCCGAACATGCTGCATACGCCCTAGCAGCATTTTTGGGCCTGGTGATAAACTGTTGGTGCCTTCACTAGTTGATGCTGCCAGGAAAGGGAAATCTAAGTTCATTATTGGAGATGGCAATAACCTTTATGATTTCACATATGTTGAAAATGTGGCTCATGGCCATATATGTGCTGAACGAGCTCTAGCTTCAGGAGGGTCAGTTTCAGAAAAAGCTTCCGGAGAGGCATATTTCATAACAAATATGGAGCCTATTAAATTTTGGGAGTTCGTGGCAGCAATAGTGGAAGGTCTTGGATATGAAAGGCCAAGAATAAAGATCCCTACCTTTGTTATCATGCCCATTGCACATTTGGTGGAGTGGATATATAAGCTGCTAGGCCCATATGGGATGAAGGTGCCTCAGTTAACCCCCTCAAGAATAAGACTGACATCTTGCAGCAGAACTTTTGATTGCTCAAAAGCAAAGGATCGCCTTGGCTATGCACCCATCATAACACTACAGGAGGGTATGCGGAGGACAATTGAATCATTCACACACTTGAAGGCTGAAAATCAACCTAAAACTAAAAGAGAAGGTCCCTCAAAAGCTTCCAAATATCTTGGAAGTGGAAAAGTTGCTGACACATTGCTTTGGAAGGATAAAAAGAAAACTTTCACCGCATTGTTAGTGTTGATTGCAATATACTTCAACTTCATTGCATCTGAAAATACGATCATTAGTGCTCTGACAAAGGTTCTATTGTTCGCATCCATCTTTTTATTCATTCATGGCATTCTACCTGCAAAAATATTGGGGTATACTATTGAGAAAATGCCCAAATCATGGTTTCAACTATCAGAAGATATGTCACATAAAATTGCTGTCTCAGTGGCCTCATCATGGAATATTGCTGTGAATGTTTTGAAATCCCTTGCAGAAGGGAATGATTGGGTGCTGTTCTTCAAGGAGTTGCCTTGGCGTTTTTAG 1497 0.4502 MAAEDRWCVVTGGRGFAARHLVEMLIRYNEYGVRIADLEASVVLEPAEQLGLLGQALHSGRAQYVSVDLRNKAQVLKALEGVEVVFHMAAPNSSINNYQLHHSVNVQGTKNVIDACLELNVKRLIYTSSPSVVFDGVHGIYNGNETMPYTHSPNDHYSATKAQGEALVIKANGTNGLRTCCIRPSSIFGPGDKLLVPSLVDAARKGKSKFIIGDGNNLYDFTYVENVAHGHICAERALASGGSVSEKASGEAYFITNMEPIKFWEFVAAIVEGLGYERPRIKIPTFVIMPIAHLVEWIYKLLGPYGMKVPQLTPSRIRLTSCSRTFDCSKAKDRLGYAPIITLQEGMRRTIESFTHLKAENQPKTKREGPSKASKYLGSGKVADTLLWKDKKKTFTALLVLIAIYFNFIASENTIISALTKVLLFASIFLFIHGILPAKILGYTIEKMPKSWFQLSEDMSHKIAVSVASSWNIAVNVLKSLAEGNDWVLFFKELPWRF 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01660 498 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1 4 385 - -
Cca03g01660 498 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 4 385 - -
Cca03g01660 498 Gene3D - 1 359 - -
Cca03g01660 498 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 9 283 IPR002225 GO:0003854|GO:0006694|GO:0016616
Cca03g01660 498 Pfam Reticulon 382 492 IPR003388 -
Cca03g01660 498 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 355 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01660 Cca-Chr3 35687576 35694481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01660 9 358 Lipid Metabolism Gene Families AT2G33630 31.522 2.33e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01660 K23558 - gmx:100816854 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01660 03 35687576 35694481 Cca03g01660 03 35687576 35694481 ECH