Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01659 ATGATTTCCACAATGAGTTGGGAAGAGAGCGACGAATTTGAGATCCCTCTTACCCAAACGACAACGAATTTTCACGCCCTCGCTTCCATTGACAACAATCAACGTCCATCCAAGAAACCTAAACGCAAAACGACGACGCTTGATAGCATTGGGAAGGAGAATCTCCCTCCTTGCGAAATTGAGAATTGCAGCTTGGATTTCATTCCTTCCACCATAGATTGTGTTTCTCTTTGCAGCGCTCAACGTTCGGGACAAGAGGACACTGTTTCTTCTCCTTCCTCTTCCGAGTCTTTGTCGGAGCTGAAAACGAAAGGGAATTATCTCCGCAACTCGATAGAGTCGAAGCTGGTGGTTTCGAGAACCGGCGCGGTTAACTGTGCAGAAGCAGAGTCTGATTCGGAGCTTGGTCTGTTGCTGAATTTGTGCGAGGAGTTAGAGGAAGTAGATAGTTCCGTTCGGTGTCCTCTGTGTGAGGTTGATATTTCGAACTTGACTGAGGAACAGCGACATCTTCATACCAATAATTGTCTTGACGAAGGAGATGAGGTTGCACTTCTTAATGACGAGAAGGGTGCTCAACATTTGCCAAAAGTTGCTTCTGTTCTTGATTGGCTACGCGGGCTTGGTTTGGAGAAGTATGAAGACGTTTTCGTTAGGGAAGAAGTTGATTGGGACACCTTGCAGTGGCTCACGGAAGAGGATCTCTTAAGCATGGGTATCACTGCACTTGGGCCGAGAAAAAAGATTGTGCATGTCCTGTGTGAACTTAGAAAAGGAAATGCCCCTACAAATGAGAAACAAGAGGATGTTTTGGCAGAGCCTAGAAGGATTAGAAACCAGAAAGTCAAATTAAAACATGACAAATCTGATAGCAAAGTTGATGGCACTAGTAAACCAGTGGCAAACAAATTAATTACTGAATATTTTCCGGGCTTTGCTTCCAAAGAAAAGAAAGTTTCTGCTTCTCCCAGAGAACAACAGGAGATGAAAAACAGTGGTTTGGATTCTGGTCGTAAGCACAAATCAAAAAATATGCCAACAAATAGAAAGCTCCGCGATGTTCCCAAATGGTGTGCCGTACAAGGAACGCCTTTCCGAGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCCCACTGGTTTCTCTCACACTTCCACTTGGACCATTATCAAGGTCTCACTAAGTCGTTCAATCATGGAAAGATCTATTGTTCCTCCATTACAGCTAGACTTGTAAATATGAACATTGGGATTTCATATGATAAATTACATGTTTTGCCTCTGAATCAAAAGGTAGAAATAGCTGGTATTGATGTGACTTGCTTGGATGCCAACCATTGTCCAGGTTCCATAATCATACTCTTTCAACCTCCGAATGGTAAGGCGGTGCTTCACACTGGTGATTTCCGCTTTAGTGAAGAAATGGCAGTCAATCCATTACTGCAGATGTGTCCTATCAATACTCTAATCCTTGATACAACATACTGTCACCCACAGTATGACTTTCCGAAACAAGAGGCTGTAATACAATTCGTTATTGATGCCATACAAGCAGAAGCTTTTAATCCCAAGACTCTTTTTCTGATTGGCAGCTATACAATTGGTAAAGAAAGGCTATTCTTGGAGGTTGCCCGTTCCCTTCGTAAAAAGGTTCACGTGACTGCGGCTAAGTTGCGTCTTTTAAAATGTTTGGAATTTAATGAGGAGGATATGCAGTGGTTTACTTCTAATGAACATGAAAGCAACATTCATGTTGCCCCTATGTGGACGCTCGCAAGCTTTAAAAGATTGAAGCACATATCAAGTCAATATAACGGTCGGTACAATCTTATAGTTGCTTTCTCCCCCACTGGGTGGACGTTTGGCAAAGGTAAAAAGAAGTCTCCTGGAAGAAGATGGCAGCAGGGTACAATTATTAGATATGAAGTGCCCTACAGTGAGCATAGCAGCTTTACAGAACTCAAAGAGTTGGTAAAACTTGTATCTCCTGATAACATTATACCAAGTGTGAATAATGATGGACCACAATCTTCTGACGCAATGATTTCTCTATTGTTATCTTAA 2064 0.4234 MISTMSWEESDEFEIPLTQTTTNFHALASIDNNQRPSKKPKRKTTTLDSIGKENLPPCEIENCSLDFIPSTIDCVSLCSAQRSGQEDTVSSPSSSESLSELKTKGNYLRNSIESKLVVSRTGAVNCAEAESDSELGLLLNLCEELEEVDSSVRCPLCEVDISNLTEEQRHLHTNNCLDEGDEVALLNDEKGAQHLPKVASVLDWLRGLGLEKYEDVFVREEVDWDTLQWLTEEDLLSMGITALGPRKKIVHVLCELRKGNAPTNEKQEDVLAEPRRIRNQKVKLKHDKSDSKVDGTSKPVANKLITEYFPGFASKEKKVSASPREQQEMKNSGLDSGRKHKSKNMPTNRKLRDVPKWCAVQGTPFRVDAFKYLRGDCSHWFLSHFHLDHYQGLTKSFNHGKIYCSSITARLVNMNIGISYDKLHVLPLNQKVEIAGIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSEEMAVNPLLQMCPINTLILDTTYCHPQYDFPKQEAVIQFVIDAIQAEAFNPKTLFLIGSYTIGKERLFLEVARSLRKKVHVTAAKLRLLKCLEFNEEDMQWFTSNEHESNIHVAPMWTLASFKRLKHISSQYNGRYNLIVAFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHSSFTELKELVKLVSPDNIIPSVNNDGPQSSDAMISLLLS 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01659 687 MobiDBLite consensus disorder prediction 331 348 - -
Cca03g01659 687 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 152 683 - -
Cca03g01659 687 Gene3D - 361 670 IPR036866 -
Cca03g01659 687 Pfam SAM domain (Sterile alpha motif) 197 253 IPR001660 GO:0005515
Cca03g01659 687 CDD SAM_superfamily 200 251 - -
Cca03g01659 687 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 152 683 - -
Cca03g01659 687 SUPERFAMILY Metallo-hydrolase/oxidoreductase 365 669 IPR036866 -
Cca03g01659 687 MobiDBLite consensus disorder prediction 316 348 - -
Cca03g01659 687 SMART SAM_4 193 259 IPR001660 GO:0005515
Cca03g01659 687 Gene3D - 501 648 - -
Cca03g01659 687 SUPERFAMILY SAM/Pointed domain 196 258 IPR013761 -
Cca03g01659 687 ProSiteProfiles SAM domain profile. 196 259 IPR001660 GO:0005515
Cca03g01659 687 Pfam DNA repair metallo-beta-lactamase 569 673 IPR011084 -
Cca03g01659 687 CDD SNM1A-1C-like_MBL-fold 341 498 - -
Cca03g01659 687 Gene3D - 193 269 IPR013761 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01659 Cca-Chr3 35681075 35687419 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01659 199 253 Glycosyltransferase AT3G07170 49.091 9.76e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01659 K15340 - gmx:100816321 1177.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01659 03 35681075 35687419 Cca03g01659 03 35681075 35687419 ECH