Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01656 ATGGCTAGCGAACGTGACATGTTCTCAGCGGAGATCGTGAACCGTGGGATTGAATCAACGGGACCGAACGCCGGATCGTTGACGTTCTCGGTGAGGGTTCGGAGGAGGTTACCGGATTTTCTTCAGTCGGTGAATCTAAAGTACGTGAAATTGGGGTACCATTATCTCATAAACCATGGCATATACTTGTTCACCATACCAGTTCTTCTGGTGGTGTTCAGTGCGGAGGTTGGTAGTCTGAGCAAAGAGGACCTGTGGAAGAAGCTTTGGGAAGACGCGCGTTACGACCTCGCCACCGTTCTCGCTTCCTTTGGCGTCCTCGTTTTCACCTTCTCTGTTTACTTCATGTCCAGGCCACGTCCCATTTATCTCATTGATTTTGCATGCTATAAACCCCAAGATGAACTCAAGGTATCTCGGGAGCAATTCATGGAGGTAGCAAGGAGGTCCGGGAAGTTCGACGAAGGGAGTCTGGAGTTCCAAAAGAGGATGCTAATGTCGTCGGGAATCGGCGACGAGACATACATCCCAAAGGCGGTGATATCCTCCGCCGAGAACACGGCCACCATGAAGGAGGGCCGCGCGGAGGCCTCGATGGTGATGTTCGGAGCCCTGGACGAGCTCTTCGAGAAGACACGTGTCCGGCCAAAGGACGTGGGAGTCCTGGTCGTCAACTGCAGCATCTTCAACCCCACGCCGTCGCTGTCGGCCATGATCATCAACCACTACAAGATGAGAGGGAACATCCTCAGCTACAACCTCGGTGGCATGGGGTGCAGCGCCGGCATCATAGGCGTGGATTTGGCCAAAGATATTCTTCAGGCCAACCCTAATAACTATGCGGTTGTCGTCAGCACTGAGATGGTGGCCTTCAACTGGTACCAGGGGAAGAATAGGTCTATGCTTATTCCAAATTGTTTCTTTCGCATGGGTTGCTCTGCGCTTTTGCTTTCTAACCGCCGTCGTGACTATAGCCGCGCCAAGTACCGTCTTGAGCACGTCGTTCGCACTCATAAAGGTGCCGATGACCGTAGCTTCAGGTGTGTGTACCAAGAGGAAGATGAGCAAAAACTGAAGGGACTAAAGATCAGCAAAGACCTAATTGAGATTGGTGGTGATGCCCTAAAAACAAACATCACCACACTAGGACCCTTGGTGCTACCCTTTTCTGAGCAGCTCCTCTTCTTTGGCACCCTTGTGTGGAGGCACTTGTTTGGCAGCAAAAGTGATGGAAACTCACCATCAATGAAGAAGCCATACATCCCTGACTACAAACTGGCTTTTGAGCACTTTTGTGTGCATGCTGCAAGCAAGACCATTCTTGATGAGCTTCAAAGGAACTTGGAACTAAGTGACAAGAACATGGAGGCATCAAGGATGACACTGCACCGCTTTGGCAACACTTCTAGCAGCAGCATTTGGTATGAGTTGGCTTACATGGAAGCAAAGGAGAGTGTGAGAAGAGGAGACCGTGTTTGGCAACTAGCATTTGGCTCAGGCTTCAAGTGCAACAGTGTGGTTTGGCGTGCCATGCGACGAGTCACCAAGCCTTCTAGGAACCCTTGGCTTGACTGCATCAACAGATACCCTGTTGTTTGA 1599 0.5091 MASERDMFSAEIVNRGIESTGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHGIYLFTIPVLLVVFSAEVGSLSKEDLWKKLWEDARYDLATVLASFGVLVFTFSVYFMSRPRPIYLIDFACYKPQDELKVSREQFMEVARRSGKFDEGSLEFQKRMLMSSGIGDETYIPKAVISSAENTATMKEGRAEASMVMFGALDELFEKTRVRPKDVGVLVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGIIGVDLAKDILQANPNNYAVVVSTEMVAFNWYQGKNRSMLIPNCFFRMGCSALLLSNRRRDYSRAKYRLEHVVRTHKGADDRSFRCVYQEEDEQKLKGLKISKDLIEIGGDALKTNITTLGPLVLPFSEQLLFFGTLVWRHLFGSKSDGNSPSMKKPYIPDYKLAFEHFCVHAASKTILDELQRNLELSDKNMEASRMTLHRFGNTSSSSIWYELAYMEAKESVRRGDRVWQLAFGSGFKCNSVVWRAMRRVTKPSRNPWLDCINRYPVV 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01656 532 Coils Coil 441 461 - -
Cca03g01656 532 PIRSF Very_long_ch_3-ktacl-CoA_syn 39 532 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca03g01656 532 SUPERFAMILY Thiolase-like 333 510 IPR016039 GO:0016746
Cca03g01656 532 Pfam FAE1/Type III polyketide synthase-like protein 114 403 IPR013601 GO:0006633|GO:0016020|GO:0016747
Cca03g01656 532 PANTHER 3-KETOACYL-COA SYNTHASE 4 531 IPR012392 GO:0006633|GO:0016020|GO:0016747
Cca03g01656 532 CDD CHS_like 98 508 - -
Cca03g01656 532 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 429 509 IPR013747 -
Cca03g01656 532 SUPERFAMILY Thiolase-like 108 326 IPR016039 GO:0016746
Cca03g01656 532 Gene3D - 122 510 IPR016039 GO:0016746
Cca03g01656 532 PANTHER 3-KETOACYL-COA SYNTHASE 10 4 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01656 Cca-Chr3 35616086 35620410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01656 2 531 Miscellaneous Gene Families AT2G26250 75.592 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01656 K15397 - gmx:100778487 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01656 03 35616086 35620410 Cca03g01656 03 35616086 35620410 ECH