Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01654 ATGGAAAGTAATGATCAGTGTGGCCAGAGTGTTGTAAGCTTGAAGAGAAAATCACCAGAAATTGGAGACCATTTACTCTTCAATAACATCATTTCTCTGGATGACCTTAATGAAGATCTCTTTGAAAGGATACTTTCATGGCTTCCAACTTCCACATTCTTTCGCCTGAATTCTGTGTGCAAGAGATGGAAATCAGTTGCATCTTCTGCCAGTTTCAAACTTGCATGCTCTCACATTCCCTCAAGGGATCCTTGGTTTTTGATGGTTGCTCCCAACCTTAACCAATCTGTTATCTTTGACTCTGCTGAGAGTACATGGAAAAGACTAAACCATCCACCTCTTCTCCAAGAAGAATCCAACCAAAATTGCATGCCGGTTGCAGCCTCTGGTGGCTTGATTTGCTACCGTAAGTTATGCGGAAACTTCATTGTAAGCAACCCTGTGTCAGGATCTTGTAGAGAACTCCCTCCACTGCAGCTTGCACCACAACACCAACCTCTCAATGCCATTGTGATGAGCACAACTTCCAAAGACCAACTCTCCTTCAAAATTGTGTTAGTCTTTGGTGAACTTCCAAATCTCTTGTTTAAGGTCTACAATTCAAACTCTGAATGTTGGGAGGATGAGACTGCATTAAGGAGAAAAGTTGAAGAGAATTCCATGGAATACGATTATGATTCCCCTGATGAGAATGTTGTGTACTTCCTAAGCAAAGCTGGAATTCTTGTGGCTAGCAACATGCAGAGAAGTCCCTCCAAGCAATATTCGTCGGTTATCACTAACAATGATGGCGAAGAGATTGTGTATTTTCTTAGCTCCTCAGGGAATGTAGTAGCTTGCAATTTGACATGCAAGTGCTTCTTTGAGTACCCCAGGTTGTTGCCTGTTTTTAGTGAGTATTCCATTGATGTTGTGGAGTGCCAAGGGGAGATGCTAGTTGTTTTGTTATCAGAGTTTTTGGAAACTGCTACTCTCAGGGTGTGGAAATATGATGAGGCTAATAGAGGGTGGCATCAGGTTGCAGCAATGCCTGCAGCAAATTCTCATGAGTGGTATGGAAAGAAGGCTGATATTAACTGTGTTGGTGCTGGTAACCAAATCTTTATATGCTTGAGCTCCACTGAGTTATGCACTTATATTTTGTGTGATTTGGAGACCAACAAATGGGTTGAATTGCCAAAATGTTGCATAAATGGAGAAGACATAGACTTTATGTCTGCCTTTTCATTTGAGCCTCGGATAGAGGCTTCTGTGTGA 1257 0.4193 MESNDQCGQSVVSLKRKSPEIGDHLLFNNIISLDDLNEDLFERILSWLPTSTFFRLNSVCKRWKSVASSASFKLACSHIPSRDPWFLMVAPNLNQSVIFDSAESTWKRLNHPPLLQEESNQNCMPVAASGGLICYRKLCGNFIVSNPVSGSCRELPPLQLAPQHQPLNAIVMSTTSKDQLSFKIVLVFGELPNLLFKVYNSNSECWEDETALRRKVEENSMEYDYDSPDENVVYFLSKAGILVASNMQRSPSKQYSSVITNNDGEEIVYFLSSSGNVVACNLTCKCFFEYPRLLPVFSEYSIDVVECQGEMLVVLLSEFLETATLRVWKYDEANRGWHQVAAMPAANSHEWYGKKADINCVGAGNQIFICLSSTELCTYILCDLETNKWVELPKCCINGEDIDFMSAFSFEPRIEASV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01654 418 Gene3D - 28 73 - -
Cca03g01654 418 PANTHER F-BOX PROTEIN FAMILY, ATFBX13-LIKE PROTEIN 28 418 - -
Cca03g01654 418 SUPERFAMILY Galactose oxidase, central domain 96 396 IPR011043 -
Cca03g01654 418 PANTHER F-BOX/KELCH-REPEAT PROTEIN 28 418 - -
Cca03g01654 418 SMART fbox_2 36 76 IPR001810 GO:0005515
Cca03g01654 418 Pfam F-box domain 33 71 IPR001810 GO:0005515
Cca03g01654 418 ProSiteProfiles F-box domain profile. 30 75 IPR001810 GO:0005515
Cca03g01654 418 SUPERFAMILY F-box domain 33 88 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01654 Cca-Chr3 35590172 35592732 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01654 - - gmx:100786481 732.25