Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01653 ATGCTTGTCTCCGAACCTTCCTCATCCTGGGATCTCAAATGCCTTCTGCAATTCGTCTTCTCCGCGTTCCTCTTCGCGATTGGATTGCTCCTGTTGCTCAAGAACACCGCCTCCAAGTACTTCGAGGTTGACGCCACTTTCCCCGCCATGCCTGGTCTCCCCATCCACGACTCCCTCTGCGCCCTTTGCCGCAACGCCGCCACCAAGAAGTGTTCTCGATGCAAATCCGTTCGATACTGTTCACAAGCATGCCAACAAGCGCACTGGAAATCCGAGCATAAGATGAGATGCAAGGAGATTCAGAGTAGTAGTGCCGTGAATTTGGCTCAAACTGGACTAACTAATAGAGGCTCTAATGCTTCTGCGGCAGTGAATAAAAGTACTTCTTCAATTGCCCTCATTCCTGAATGTGGTCGCGGAACTTCAAGGCCTATCAAGCAGCCTAAAAGTGTTCTTTTTCCTTATGAAGACTTCGTCAAATTGTTTAACTGGGACAAGCCAGGATTTCCTCCTTGTGGACTCTTAAATTGTGGAAACAGCTGCTTTGCAAATGTGGTTCTCCAATGTCTCTCATTCACAAAACCGCTTATTGCCTACTTGTTGGAGAATGGCCACCGCAAAGAATGCTGTCATAATGATTGGTGCTTTCTTTGTGAATTTGAAACCCATGTTGAAAAGGCAAGGCTAAGTTCTCAGGCGTTCTCTCCGATGAATATTCTCTCTCGATTGCCTAATATTGGTGGTACACTGGGTTATGGAAGACAAGAGGATGCCCATGAGTTCATGAGGTTTGCAATTGATGCGATGCAATCTGTTTGCCTCGAAGAGTTTGGTGGAGAAAAAGCTGTTGCTCCTAAGCTTCAGGAAACAACCCTTATCCAACACATTTTTGGTGGCCACCTTCAATCCGAGGTGATTTGCACTGAATGTGAGAAGAATTCAAATCAATATGAAAATATGATGGACTTAACAGTTGAAATTCACGGAGATGCTGCTTCCTTGGAGGAATGTCTAGATCAGTTTACTGCCAAGGAGTGGCTTCATGGGGATAATATGTATAAATGTGATGGATGCAAGGGTTATGTCAAGGCATGGAAACGTCTAACAGTGAAACGAGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAGTAACTTTCCCTGAGACCTTAGATCTTAGTCCTTACACGAGTGAAGCTGGATATGGATATGATATTTATAAGCTATATGCTGTTGTAGTTCATATTGATATGCTGAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCCGTGGAAACTGGTATAGAATTGATGATTGGAAGGTCATGAAAGTGGAATTGGAAGAGGTGCTTTCTCAGGCCGCATATATGCTGTTGTATAGCAGGGTTAATGCTCGACCATCAGGACTTCAAAGTATTGAATCGCCAGAGATAGCTGAAGTGCAAACAGTTGAACCGGAGGTGCAATCTGGCCCAACTGAACAAGCTGAATGCCTCTCGGATATGAAAACTGAGACTTACAGTGGAGGATGTGAGGCTATTCCATTTGACAATAGTCCAGTGTCGAAGTTTTCAGGCGGTGAAAATGTGTGTTTGTCCAGAATGGACACTGGAATTAAGACAGAGCATTCTAAGGATGTTGCTAATGAGTCTTTTGGTAACGGTGTTGAATCTGTCAATGTGCATGATTCTGAAGCTGTCAAAGATTTGGGGGATGTAGATATGGTCGGATCAAATACATGCTCGTCTGTTTTGGAAGAGATTTCGGACTGCATGGAAGAGCAAGATGATAGTGATATAACTAAGTCCACTTCTCCATGTTTACCTAATGGCTTTTCTCGCTTTGACAAGCATTCTTCTGTTTCAGTGGATTCTCAAAACACAAGGGAAGATTCAGATGCAGAACATGTAAATGTGATTAAATGCAAGGTAACAGCAAATGGCTTTGCAAATTATAGCAATGGGTATGCCAGTGCAAACAAATGTGATGGTACTCTTTCCACTGAAAAACCCTCAGCTGAAATGCATCAATTGAAGCGGAGATTGGCTTCTGATAATTCTGAAGCTGACAAAGGAAATGGAGATAAGAAAGTGGAAATATCAGGGAATAAGTTAATACTTTAG 2169 0.4278 MLVSEPSSSWDLKCLLQFVFSAFLFAIGLLLLLKNTASKYFEVDATFPAMPGLPIHDSLCALCRNAATKKCSRCKSVRYCSQACQQAHWKSEHKMRCKEIQSSSAVNLAQTGLTNRGSNASAAVNKSTSSIALIPECGRGTSRPIKQPKSVLFPYEDFVKLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTKPLIAYLLENGHRKECCHNDWCFLCEFETHVEKARLSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFAIDAMQSVCLEEFGGEKAVAPKLQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKGYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYTSEAGYGYDIYKLYAVVVHIDMLNASFFGHYICYIKDFRGNWYRIDDWKVMKVELEEVLSQAAYMLLYSRVNARPSGLQSIESPEIAEVQTVEPEVQSGPTEQAECLSDMKTETYSGGCEAIPFDNSPVSKFSGGENVCLSRMDTGIKTEHSKDVANESFGNGVESVNVHDSEAVKDLGDVDMVGSNTCSSVLEEISDCMEEQDDSDITKSTSPCLPNGFSRFDKHSSVSVDSQNTREDSDAEHVNVIKCKVTANGFANYSNGYASANKCDGTLSTEKPSAEMHQLKRRLASDNSEADKGNGDKKVEISGNKLIL 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01653 722 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 173 188 IPR018200 GO:0004843|GO:0006511
Cca03g01653 722 MobiDBLite consensus disorder prediction 691 722 - -
Cca03g01653 722 Gene3D - 55 103 - -
Cca03g01653 722 Gene3D Cysteine proteinases 168 485 - -
Cca03g01653 722 CDD Peptidase_C19E 171 476 - -
Cca03g01653 722 Pfam Ubiquitin carboxyl-terminal hydrolase 172 475 IPR001394 GO:0004843|GO:0016579
Cca03g01653 722 Pfam MYND finger 60 97 IPR002893 -
Cca03g01653 722 ProSiteProfiles Zinc finger MYND-type profile. 60 97 IPR002893 -
Cca03g01653 722 SUPERFAMILY HIT/MYND zinc finger-like 55 101 - -
Cca03g01653 722 SUPERFAMILY Cysteine proteinases 168 487 IPR038765 -
Cca03g01653 722 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21 688 - -
Cca03g01653 722 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 21 688 - -
Cca03g01653 722 MobiDBLite consensus disorder prediction 691 713 - -
Cca03g01653 722 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 172 478 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01653 Cca-Chr3 35580963 35587811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01653 11 483 Miscellaneous Gene Families AT4G31670 64.017 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01653 K11855 - gmx:100810577 1168.68