Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01651 ATGAATGACCCTTTGGTTGCAGCTGCGCAAGCTGGGGACATAGACTTGCTCTATAAACTGATTCAGATGAAACCATATCTCTTGGAGGGCACTGATTTGGTTCCATTTGTTGACACACCTCTGCATTTTGCTGCTGCTGCTGGACATGCCAGTTTCGCCACTGAGATCATCAGACTCAAACCCTCATTTGCTTGGAAGCTCAATCAGCGTGGACTCAGCCCCATGCACCTTGCTTTGCAAAACAAGCACTACAGAATGGTGTGTCGCTTCGTGGACATCAACAAAGACCTTGTCAGAGTGAAAGGGAGAGAGGGTTTCACTCCTTTGCATATTGCAACTCAAACTGGGAAAACTGATCTTGTGGCTAAATTCTTGTCGGCTTGTCCTGGTTCTATTGAAGATGTGACTATTCGAAGTGAGACAGCGTTGCATGTTGCTGTGAAATATAATCAGTTGCAGGCTTTGGAGGTTTTGGTTGGATGGCTTCAGAGAAACTGCCAAAGGCATGCTCACGACCGGGAAAAAGAGATTCTGAACTGGGAGGATGAGGCAGGCAACACCATTCTGCACCTTTCAGTTCTCAATGGCTCTTCACAGGCAGTAAGATTGTTGATAGGCAGCAAGATAAACATAAACGCGAAGAATTTAGAGAACTCAACAGCATTGGACATAGTGGAGATTAATCCGACTCAGGCTCACAGTGCAGAGATGAGAGACATGCTACTTAGAGGAGGAGCTTTACGTGGCTTTTCACTTTCTACCGCTCCACTCCTGGAAGAAGAGCTAAGAGCCAAAATCACATTCAACGAGAGAATAGCAATCTTCGTGACACGCCTCAGAAAGAGAATATCACACGACACACGCAACGCTTTGTTGGTAGTTGCTATTCTCTTCGCAACAAGCACGTACGAAGCAGCACTTAGCCCTCCTGGTGGAGTTTACCAAGGCGAGGGTAGTATTAAACCAGCACCACCCTTTAGGAAAAATAGCGTATCCGGGGAACACATTGGTGATGCAACAGAAGAATATGTTGGGAAAGTGGTGATGAAATCGAAGACCTTCTTTTGGTTCTGGTCCTTCAACACATTTTCCTTTTACCTATCAATTTTGATGATATGTTTGCTAATGCCTCGAGGGCGCATCAGCGTTATAGTGACTTTTCCACTTTCTATCTTTTCTGGTTGCTACGTGTTTTCCATGTTGGTTATATCTCCCAGCCTCAAGTTAAACGCTGCCACTGTGATTCTGCCATGTTTGTTTACAGTGTTGTACTGTTGGGGAAGTTCGATATACATTAGATTAGCTACAAAACTTAAAATGTATGGTCATAAACAGAAAGACACGTTCAAGTTTGCAGGAGGAAACAGATGGTAA 1374 0.4454 MNDPLVAAAQAGDIDLLYKLIQMKPYLLEGTDLVPFVDTPLHFAAAAGHASFATEIIRLKPSFAWKLNQRGLSPMHLALQNKHYRMVCRFVDINKDLVRVKGREGFTPLHIATQTGKTDLVAKFLSACPGSIEDVTIRSETALHVAVKYNQLQALEVLVGWLQRNCQRHAHDREKEILNWEDEAGNTILHLSVLNGSSQAVRLLIGSKININAKNLENSTALDIVEINPTQAHSAEMRDMLLRGGALRGFSLSTAPLLEEELRAKITFNERIAIFVTRLRKRISHDTRNALLVVAILFATSTYEAALSPPGGVYQGEGSIKPAPPFRKNSVSGEHIGDATEEYVGKVVMKSKTFFWFWSFNTFSFYLSILMICLLMPRGRISVIVTFPLSIFSGCYVFSMLVISPSLKLNAATVILPCLFTVLYCWGSSIYIRLATKLKMYGHKQKDTFKFAGGNRW 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01651 457 Pfam Domain of unknown function 285 378 IPR026961 -
Cca03g01651 457 Pfam Ankyrin repeats (many copies) 176 224 IPR002110 GO:0005515
Cca03g01651 457 ProSiteProfiles Ankyrin repeat region circular profile. 104 125 - -
Cca03g01651 457 ProSiteProfiles Ankyrin repeat region circular profile. 184 215 - -
Cca03g01651 457 Gene3D - 1 251 IPR036770 -
Cca03g01651 457 ProSiteProfiles Ankyrin repeat profile. 104 125 IPR002110 GO:0005515
Cca03g01651 457 Pfam Ankyrin repeats (3 copies) 99 159 IPR002110 GO:0005515
Cca03g01651 457 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Cca03g01651 457 SMART ANK_2a 104 134 IPR002110 GO:0005515
Cca03g01651 457 SMART ANK_2a 184 213 IPR002110 GO:0005515
Cca03g01651 457 SMART ANK_2a 138 170 IPR002110 GO:0005515
Cca03g01651 457 SMART ANK_2a 36 65 IPR002110 GO:0005515
Cca03g01651 457 SMART ANK_2a 70 99 IPR002110 GO:0005515
Cca03g01651 457 PANTHER HOMEOBOX PROTEIN WARIAI 11 422 - -
Cca03g01651 457 PANTHER ANKYRIN REPEAT PROTEIN 11 422 - -
Cca03g01651 457 SUPERFAMILY Ankyrin repeat 4 228 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01651 Cca-Chr3 35558921 35560720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01651 5 431 Miscellaneous Gene Families AT5G15500 39.261 1.61e-90 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01651 - - gmx:100790227 731.095