Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01641 aTGATTGAGAGAGAGAGAGGAGTAGGTATTAGAGGGGTGAGGGAAGGTGGAAGAATAAAAGACAAGTTGGTGGAAGGCCAAAGAATTAGAATCCATCCATCCTCTCATCTCATCTCATCAACGCTGCCAGAATCAATGGAGCTCACACCCCAGCAGCTCAGCCAGTACAACGGAACCGACCCCTCCAAGCCCATCTACGTGGCGGTGAAGGGCCGCGTCTACGACGTCACCACCGGAAAATCCTTCTACGGCCCCGGCGGCCCCTACGCCATGTTCGCCGGCAGGGACGCCAGCAGAGCCCTCGCCAAGATGAGCAAGAACGACGAAGACATCTCCCCCTCCCTCGATGGCCTCTCCGACAAGGAGATCGGAGTTCTCAACGATTGGGAGAACAAATTCCAAGCTAAGTACCCTGTCGTTGCTCGCCTTCTCAATTAA 438 0.5479 MIERERGVGIRGVREGGRIKDKLVEGQRIRIHPSSHLISSTLPESMELTPQQLSQYNGTDPSKPIYVAVKGRVYDVTTGKSFYGPGGPYAMFAGRDASRALAKMSKNDEDISPSLDGLSDKEIGVLNDWENKFQAKYPVVARLLN 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01641 145 PANTHER MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED 42 144 - -
Cca03g01641 145 Gene3D - 45 144 IPR036400 -
Cca03g01641 145 PANTHER CALCUTTA CUP-RELATED 42 144 - -
Cca03g01641 145 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 44 144 IPR036400 -
Cca03g01641 145 Pfam Cytochrome b5-like Heme/Steroid binding domain 49 111 IPR001199 -
Cca03g01641 145 SMART Cyt_b5_2 48 144 IPR001199 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01641 Cca-Chr3 35436729 35437679 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01641 K17278 - gmx:100779765 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01641 03 35436729 35437679 Cca03g01641 03 35436729 35437679 ECH