Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01632 ATGGGCCACGTAGGTTCCAGCAAGGACGGCACCAAGGCCGGCGCGTCGATGGACATCTTCGGCGGCGACGACGACGACCTCGGCGACCTCGGTCCGAGCAACGCCGAAATCCTCGAAGAAATCGGCGAATGGAAGGTCCGCGAGCTCTGCAAGAAGGCCTCGATGCTGTTCTTCAACGAGTACGGTCTGATCAGCCACCAGATCAACTCCTACAACCACTTCGTCGCCATTGGCCTTCAGCAAACCTTCGATTCCTTCGGCGACCTTGTCATCACGCCCGGCTTCGATCCTTCCAAGAAGGGCGACAACGAGCACTACCGTTACGCCTCCGTCAAGTTCGGCAAGGTCAAGCTCGAAAAGCCCATGTTCTGGGGCGGCGAAGGGAACGCGCAGGAGTTTAAGATGCTTCCCCGCCACGCCAGGCTTCAGAGGATGACCTACGCTTCCAAAATCAAAATCGAAGTTAACGTTCAGGTCTATGTTCCGAAGAAGGTTCGAAGTGATAAGTTTAAGACTGGGAAGGAGGAGTTCCTGGATAGAGAGATTCTGAAGGAAGATGACAGGGAGATTATCATTGGGAGATTGCCTGTCATGGTCAAGTCTGATTTATGCTGGATGAATGGGGCGGAAAAGTATGACTGTGAATTTGACCATGGCGGGTATTTTCTCATTAAGGGTGCAGAGAAGACTTTTATTGCACAGGAGCAACTGTATTTGAAGAGGCTATGGGTTTTAAATAGTCCAGGCTGGGTTATTGCCTACAAGTCACAGATGAAGAGAAATAGGATGGTTGTTAAACTGGTAGGGAATTCTGGTGGCAGTGAAGAAACGGACAATGGGGACATGTCTCTGACTGTGTATTTTTTGTCTGTTGAGATTCCTGTGTGGATACTATTTTTTGCTCTTGGTGTCTCTTCTGACAGAGAGGTTGTAGATCTCATTGGATGTGGAAGTGATGATGCTAGAATTCAGAATATTCTCTTTGCATCTGTTCGTGATGCTGATGAAAAATGTGGATCATATCGGAGAGGTAAGTTTGCAGTTCAATATTTAGAAAGTAAAGTAAAAGGTGTCCAATTTCCACCTTCTGAATCTATTCAGGAGTGCCTTGAAATGTATGTCTTTCCGGGAATTAAAGGATTAAATAGAAAGGCGCGCTTCCTTGCATATATGGTTAAGGGTCTCTTGCTGGCTTATACTGGCCGCAGAAAATGTGATAATAGGGATGACTTCCGAAATAAGAGGCTTGAATTGGCCAATGAGCTGCTTGACCGTGAGTTGAAGGTGCACATTGCACATGCAAGGAAGCGAATGGCAAAGGCTTTGCAGAGAGACCTTTACGGAGATAGGGAAGTACGCCCAATTGAGCATTATCTCGACGCATCAATAATTACAAATGGTTTGCAAAGGGCATTTTCGACTGGAGCATGGTCACATCCATACAAGAGGATGGAAAGGATCTCAGGTGTGGTTGCAAATGTTGGGCGTACTAATCCCTTACAAACCATGGCCGAGTTGAGAAGAACACGGCAGCAAGTCCAGTACACGGGAAAAGTAGGGGATGCTAGATACCCGCACCCGTCTCACTGGGGAAAGGTATGTTTCCTCTCTACCCCAGATGGTGAAAATTGCGGACTAGTAAAAAATTTGGCTGTCACAGGGCTAGTAAGTACTAATGTATTGGACACATCTGAATCTATACTGCCTAAATTGTTGGAATGTGGAATGGAAGAACTTGTAGATGATACTTCCACTCGTCTGGGTAACAAGGACAAAATCTTCCTAAATGGTGATTGGGTTGGAGTGTGTGCTGATTCCAGTTCGTTTGTGGCAGAGCTACGAAGTAGAAGACGGAGAAATGAAATGCCTCATCAGGTGGAGATCAAGAGAGATCAATCTCAACATGAAGTGCGCATATACTCTGATGCAGGAAGGATTCTACGTCCTCTTTTGGTAGTTGGTAATCTACTCAAGATTAAAGATTTTAAATCAGAACGTTATTCTTTTCAATCTCTATTGGATAGGGGTGTGATTGAGCTGATTGGACCCGAAGAAGAGGAAGACTGCACTACTGCCTGGGGTGTTCAGTATTTATTTGGAAAAGAGGGAAAACGTACTGCTGAGTACACACACTGTGAACTTGATATGTCATTCTTATTGGGTTTAAGCTGTTCACTTGTACCGTTTGCTAATCATGACCATGCAAGGAGGGTACTCTACCAGTCTCAGAAGCACTCCTCACAGGCTATTGGCTTTTCTACAGTAAACCCGCTAATTAGAGTTGATACTTTGTCTCACCAGTTACACTACCCCCAAAGGCCACTTTTTCGAACAATGACATCAGATTCTCTTGGAAAAGCAGAACTGTGTCAAAAGGAACTACTTCCAAAGGCAGAATTCTATAATGGGCAGAATGCAATAGTGGCTGTCAATGTACATCTGGGATACAATCAAGAGGATTCCCTGGTGATGAACCGTGCTTCGTTGCAGCGTGGTATGTTCAGATCTGAGCATGTAAGGAGTTACAAATCTGAAATTGAAAATAAGGACTCTTCGGAGAAAAAGCGAAAACCTGAAGACATTGTAAATTTTGGAAAATTACAAAGTAAGATTGGTCGAGTTGACAGCCTTGATGATGATGGCTTTCCATATGTTGGAGCAAACTTACAAAGTGGTGATATTATTATTGGGCGGTGTGCTGAGTCTGGTGCCGACAATAGTGTGAAGTTAAAACACACTGAGAGGGGTTATGTGCAAAAGGTTGTGCTGTCTTCAAATGATGAAGGGAAAAATTTTGCTGTGGTTTCGTTAAGACAGGTTCGAAGTCCAGTTCTTGGAGACAAGTTCTCCAGTATGCATGGACAAAAGGGAGTTTTGGGATTTCTGGAGTGTCAGGAAAATTTTCCTTTCACAAGACAAGGCATTGTTCCTGATATTGTCATAAATCCGCATGCATTTCCTTCACGACAAACTCCTGGGCAACTCCTAGAGGCTGCTTTAGGAAAGGGGATTGCTTGTGGTGGTAAACTGAGATATGCTACGCCTTTCTCCACTCCTTCTGTTGATGCCATTACCGACCAACTTCACAGTGCTGGATTTTCAAGATGGGGAAATGAGAGGGTATACAATGGGAGGACTGGTGAGATGGTCCGATCACTCATTTTTATGGGACCGACGTTTTACCAACGTCTACACCACATGTCTGAAGACAAAGTGAAATTCCGCAACACTGGACCGGTTCACCCGCTGACCCGACAGCCTGTAGCTGACAGAAAACGATTTGGAGGTATCAAGTTCGGTGAAATGGAGCGTGATTGCCTTATTGCTCATGGTGCATCAGCCAACCTGTATGAACGCCTCTTCACACTCAGTGACTCCTCTCAGATTCACATATGCAGCAAATGCAAAAATGTTGCAAATGTGATCTTGCGGCCAGTCTCCGGTGGCCGGAAAATACGAGGACCTCATTGCCGCCACTGTGATTCTGCGGACGAAATTGTGGTGGCCAATGTCCCGTATGGAGCAAAATTATTATGCCAGGAGCTCTTTAGCATGGGCATAAATCTTAAATTTGAAACTCAACTTTGTTAG 3591 0.4525 MGHVGSSKDGTKAGASMDIFGGDDDDLGDLGPSNAEILEEIGEWKVRELCKKASMLFFNEYGLISHQINSYNHFVAIGLQQTFDSFGDLVITPGFDPSKKGDNEHYRYASVKFGKVKLEKPMFWGGEGNAQEFKMLPRHARLQRMTYASKIKIEVNVQVYVPKKVRSDKFKTGKEEFLDREILKEDDREIIIGRLPVMVKSDLCWMNGAEKYDCEFDHGGYFLIKGAEKTFIAQEQLYLKRLWVLNSPGWVIAYKSQMKRNRMVVKLVGNSGGSEETDNGDMSLTVYFLSVEIPVWILFFALGVSSDREVVDLIGCGSDDARIQNILFASVRDADEKCGSYRRGKFAVQYLESKVKGVQFPPSESIQECLEMYVFPGIKGLNRKARFLAYMVKGLLLAYTGRRKCDNRDDFRNKRLELANELLDRELKVHIAHARKRMAKALQRDLYGDREVRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTNVLDTSESILPKLLECGMEELVDDTSTRLGNKDKIFLNGDWVGVCADSSSFVAELRSRRRRNEMPHQVEIKRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKDFKSERYSFQSLLDRGVIELIGPEEEEDCTTAWGVQYLFGKEGKRTAEYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTVNPLIRVDTLSHQLHYPQRPLFRTMTSDSLGKAELCQKELLPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHVRSYKSEIENKDSSEKKRKPEDIVNFGKLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGRCAESGADNSVKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLECQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGKLRYATPFSTPSVDAITDQLHSAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPHCRHCDSADEIVVANVPYGAKLLCQELFSMGINLKFETQLC 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01632 1196 Pfam RNA polymerase beta subunit 62 454 IPR007644 GO:0003677|GO:0003899|GO:0006351
Cca03g01632 1196 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 47 1193 - -
Cca03g01632 1196 Pfam RNA polymerase Rpb2, domain 3 496 553 IPR007645 GO:0003677|GO:0003899|GO:0006351
Cca03g01632 1196 Pfam RNA polymerase Rpb2, domain 7 1095 1193 IPR007641 GO:0003677|GO:0003899|GO:0006351
Cca03g01632 1196 ProSitePatterns RNA polymerases beta chain signature. 946 958 IPR007121 GO:0003677|GO:0003899|GO:0006351
Cca03g01632 1196 Gene3D - 755 942 IPR014724 GO:0003899
Cca03g01632 1196 Gene3D RNA polymerase alpha subunit dimerisation domain 1080 1194 - -
Cca03g01632 1196 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 32 1193 IPR015712 GO:0003899|GO:0006351|GO:0032549
Cca03g01632 1196 Pfam RNA polymerase Rpb2, domain 2 270 417 IPR007642 GO:0003677|GO:0003899|GO:0006351
Cca03g01632 1196 Gene3D - 725 1079 IPR037033 GO:0003677|GO:0003899|GO:0006351
Cca03g01632 1196 Gene3D RNA polymerase Rpb2, domain 2 248 405 IPR037034 GO:0003677|GO:0003899|GO:0006351
Cca03g01632 1196 Pfam RNA polymerase Rpb2, domain 5 669 715 IPR007647 GO:0006351
Cca03g01632 1196 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 32 1193 - -
Cca03g01632 1196 Gene3D - 406 593 - -
Cca03g01632 1196 Gene3D - 57 238 - -
Cca03g01632 1196 CDD RNA_pol_B_RPB2 63 1192 IPR015712 GO:0003899|GO:0006351|GO:0032549
Cca03g01632 1196 Pfam RNA polymerase Rpb2, domain 4 593 653 IPR007646 GO:0003677|GO:0003899|GO:0006351
Cca03g01632 1196 Pfam RNA polymerase Rpb2, domain 6 724 1093 IPR007120 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01632 Cca-Chr3 35366327 35372409 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01632 - K16252 gmx:100815934 2194.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01632 03 35366327 35372409 Cca03g01632 03 35366327 35372409 ECH