Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01627 ATGGACGACGATAAAATAATCGGATACGTGACTGCGTACCTGAAGAAGAAAGGGTTCACGCAAACCGAGAAGGTTTTTCAGGAAGAATTCCAACACAACAAGTCCAATTCCCTTCTCGAACCCGACATCGCCAATCACCTTCTCGCATTCTCTCACTTGGAGAGTGGTCCCGCCAGGTTCCACGACGGCTACAGCAAACTAAGAACATGGACTTATTCTTCCCTCGACTTGTACAAGCACGAGTTGCTTCGCGTGCTTTATCCCGTGTTTATACACTGCTTTATGGATCTTGTCGCCAAAGGACACGTTCAGGAAGCTCGGAACTTTTTCAATACTTTCCGTGAAGACCATGAAATGATGCACTTACGGGACCTTCAGAAGTTGGAAGGAGTACTTTCTCCTACCCATCTCGAGGAGATGGAATTCGCTCATTCACTTAGACAGAGCAAATTCAACATAAAGATATGTGAGTATTCCAATGAGCTTCTGTTGCAACATCTACACAGTACACAATCCACCACTATACTTGGCATTATCAATGAGCATATTAACTTTCAAGTTACCCCTGGACAACCTAGCTTAATTTCTGACGATCCAGAAGCTGTTACCCTTACTGGAAGCAGCCAGGAAGCAGCAAACCGGATAAATCAAAAAGAAATACATTGGGGGTTGCTTGAAGACTCTCTTGAAGAACGGCTGGAGAAGGCTGGGGCCTTGCTTTCAGACTCTGAAAAGGGTGAAGGGGATGCAAAAGAGGGGGAGAATGAGGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGCTTCAGTCAAAAAAGTAAAAAAGGACAAGGGTGGAAGTGCCACCGGAAAAAATGCAAAACCTGAGTCTAACACTGCACCTGCAGCTCCTCGAGTTAAGCCAGAACTCCCCTTGCCCGTAATTCCAACTGAGGTGGAGCAGTCCATCCTTGAGGATTTAAGGAACCGTGTACAGCTTAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATTTATCAATACACATAATGGTTTAAGCTGTTCATCAATATCCCATGATGGATCATTGGTTGCTGGGGGATTTTCTGACTCATCTCTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAGCCTACCAATTCTCTTTTGCAGGGTGAGAATGACACATCACAAAATGAACATATGTTAGGGCAAGGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGGCCTGTTTATGCAGCCTCTTTTAGTCCTGTCGGGGATTTTATCCTTTCTTCCTCTGCAGACTCAACAATTCGTTTATGGAGCACAAATCTTAATGCAAATCTTGTTTGTTATAAGGGTCACAATTACCCGGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCTTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCTGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGTCAACTGCAACTACATTGCAACTGGTTCCAGTGACAAAACAGTTCGACTATGGGATGTGCAGAGTGGCGAGTGTGTCCGAGTTTTTGTTGGTCACAGGGGTATGATTTTGTCTCTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGCGATGAAGATGGTACGATCATGATGTGGGACCTTTCTAGTGGCCGTAGTCTTACACCTTTAATTGGGCACACATCATGTGTCTGGTCGCTCGCTTTCAGTTCTGAAGGTTCTATTCTAGCATCTGGATCTGCTGATTGCACTGTAAAATTATGGGATGTAAATACGAGCACCAAGGTTTCAAGGGCTGAAGAAAAAAGCGGGAATGCTAACAGACTTAGATCATTGAAAACTCTGCCAACCAAATCGACTCCAGTTTACTCTTTGCGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGAGCACTAGCAAAAAGTGGCTAA 1998 0.4459 MDDDKIIGYVTAYLKKKGFTQTEKVFQEEFQHNKSNSLLEPDIANHLLAFSHLESGPARFHDGYSKLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPTHLEEMEFAHSLRQSKFNIKICEYSNELLLQHLHSTQSTTILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANRINQKEIHWGLLEDSLEERLEKAGALLSDSEKGEGDAKEGENEETKKRSIEGGKQGASVKKVKKDKGGSATGKNAKPESNTAPAAPRVKPELPLPVIPTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGQQPTNSLLQGENDTSQNEHMLGQGGGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTNLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQSGECVRVFVGHRGMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRSLTPLIGHTSCVWSLAFSSEGSILASGSADCTVKLWDVNTSTKVSRAEEKSGNANRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALAKSG 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01627 665 Pfam WD40 associated region in TFIID subunit, NTD2 domain 55 183 IPR007582 -
Cca03g01627 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 574 - -
Cca03g01627 665 ProSitePatterns Trp-Asp (WD) repeats signature. 514 528 IPR019775 -
Cca03g01627 665 MobiDBLite consensus disorder prediction 238 284 - -
Cca03g01627 665 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Cca03g01627 665 SUPERFAMILY WD40 repeat-like 335 660 IPR036322 GO:0005515
Cca03g01627 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 411 443 - -
Cca03g01627 665 MobiDBLite consensus disorder prediction 238 303 - -
Cca03g01627 665 SUPERFAMILY Taf5 N-terminal domain-like 45 188 IPR037264 -
Cca03g01627 665 ProSitePatterns Trp-Asp (WD) repeats signature. 360 374 IPR019775 -
Cca03g01627 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 411 443 IPR001680 GO:0005515
Cca03g01627 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 453 487 - -
Cca03g01627 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 494 IPR001680 GO:0005515
Cca03g01627 665 PANTHER CANNONBALL-RELATED 8 664 - -
Cca03g01627 665 Gene3D TFIID subunit TAF5, NTD2 domain 39 188 IPR037264 -
Cca03g01627 665 Gene3D - 249 491 IPR015943 GO:0005515
Cca03g01627 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 495 532 - -
Cca03g01627 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 495 536 IPR001680 GO:0005515
Cca03g01627 665 CDD TAF5_NTD2 57 189 IPR007582 -
Cca03g01627 665 ProSitePatterns Trp-Asp (WD) repeats signature. 556 570 IPR019775 -
Cca03g01627 665 SMART WD40_4 446 485 IPR001680 GO:0005515
Cca03g01627 665 SMART WD40_4 488 527 IPR001680 GO:0005515
Cca03g01627 665 SMART WD40_4 404 443 IPR001680 GO:0005515
Cca03g01627 665 SMART WD40_4 334 373 IPR001680 GO:0005515
Cca03g01627 665 SMART WD40_4 572 611 IPR001680 GO:0005515
Cca03g01627 665 SMART WD40_4 530 569 IPR001680 GO:0005515
Cca03g01627 665 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 8 664 IPR037783 -
Cca03g01627 665 ProSitePatterns Trp-Asp (WD) repeats signature. 598 612 IPR019775 -
Cca03g01627 665 Pfam WD domain, G-beta repeat 575 611 IPR001680 GO:0005515
Cca03g01627 665 Pfam WD domain, G-beta repeat 490 527 IPR001680 GO:0005515
Cca03g01627 665 Pfam WD domain, G-beta repeat 531 569 IPR001680 GO:0005515
Cca03g01627 665 Pfam WD domain, G-beta repeat 343 373 IPR001680 GO:0005515
Cca03g01627 665 Pfam WD domain, G-beta repeat 450 485 IPR001680 GO:0005515
Cca03g01627 665 Pfam WD domain, G-beta repeat 408 443 IPR001680 GO:0005515
Cca03g01627 665 CDD WD40 411 660 - -
Cca03g01627 665 PRINTS G protein beta WD-40 repeat signature 430 444 IPR020472 -
Cca03g01627 665 PRINTS G protein beta WD-40 repeat signature 514 528 IPR020472 -
Cca03g01627 665 PRINTS G protein beta WD-40 repeat signature 598 612 IPR020472 -
Cca03g01627 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 579 614 - -
Cca03g01627 665 Gene3D - 575 664 IPR015943 GO:0005515
Cca03g01627 665 Gene3D - 492 574 IPR015943 GO:0005515
Cca03g01627 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 578 IPR001680 GO:0005515
Cca03g01627 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 579 620 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01627 352 630 Miscellaneous Gene Families AT5G08390 24.042 8.38e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01627 K03130 - gmx:100781563 1241.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00753 05 20828109 20829739 Cca03g01627 03 35268985 35280418 PCT