Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01622 ATGTACGACGCAGCTGAACTCCTCCGTCTCTCCAAGCACATCACCACCCTCGAATCCCTCCTCCGTTTCCACGCCGTCACGGTGACGAGCGGCCACAGCACCAACCTCTTCCTGGCCTCAAAGCTGATATCTCTCTACGACTCTCTCAGCATCGACCACACTCCATGCTCCACCCTCTTCCACTCCCTCCCCCACAAAGACACCTTCCTCTGCAACTCCCTCCTCAAATCCCTCTCCTCGCGCTCCCTCTTCCCCCAACTCCTCTCCCTCTTCTCCCGCATGCGCGCCTCCAACCTCTCCCCCAACCACTTCACTCTCCCCATTGTCTTCTCCGCCGCCGCTCACCTTCCCCTCGCCGCCGCCCTCCACACCCTCGCCGCCAAATCCGCCCTCCTCCCCTCCTCCGCCGCCTCCCTCCTCTCCCTCTACTCCCGCTGCGCCAGAATCGACCTCGCGCGCAAGCTGTTCGACGAAATTCCCGTTAGGGATGTCGTTGCTTGGACTGCACTCATCGTTGGGTTGGCCCACAATGGGGAGCCTGAGGAGGCTTTGAGGTGTCTCCGTCACATGCATGCCCATCATGATGATGACCAGAAGCCCAACGCCAGAACGTGGGAGGGTGGGTTTCTCGCGTGTGGGAACCTCGCTGATGTCAAACAAGGCGCGTGCTTGCACGCGGCGCTTGTCAAAAACGGGGTTGCTTCGTTTTTACAGTCTTCGGTTTTGGATATGTATTCCAAGTGTGGGGTTCCGTGGGAGGCGTACCGGGCTTTTTGTGAGGTGGGTCGGAAAGATCTTCTGTGTTGGACGTCCATGGTTGGGGTTTGGGCCAAGGTTGGGATGATGGGGGAGTGCGTGAGGTTGTTTAAGGAAATGCTGGAGAACGGATTGGACCCCGATGGGGTTGTTGTTGGTTGCGTGGTTTCGGGGTTTGGTAATTCCATGGATGTGCCTGGAGGGAAAGCGTTTCATGGAGTGGTTATAAGGAGACATTTTGTGGATGATGAGAAAGTTAATGATTCGCTGTTGTTTATGTACTGCAAGTTTGGGATGTTGAGTTTGGCGGAGAGGCTTTTCGCTCGGTGTCGTGGAAGTGGTGGAGATTGCTGGAACTTTATGGTTTTTGGGTATGGTAGAATAGGGGAGGATGTGAAGTGTGTTGAGCTCTTTAGGGAGATGCAGTGTTTAGGCATTCCTTCTGAATCAATTGGGGTTGCTTCGGCAATTGCCTCGTGTGCCCAGTTGGGAGCAGTTAATTTGGGAAGGTCGATTCATTGCAATGTGATAAAGGGCTTTTTGGATGGTAACATTTCGGTCACCAACTCGCTCATAGAGATGTATGGCAAATGTGGTAAGATGACGTTTGCTTGGAGAATATTTAATAGGTCGGAGAGGGATGTTCTATCATGGAACACTCTGATTTCGTCTCATGTTCACGTCAAGCATCATGAAGAGGCTGTAAATTTATTTAATAAAATGGTTAGGGAAGACCAGAAGCCCAATACAGCCACGCTTGTGGTAGTGCTTTCAGCTTGTTCTCACCTTGCATCTCTAGATGAAGGAGAAAGAGTTCACCGCTACATAAATGAAAGTGGATTTAGACTCAATTTACCTCTTGGCACAGCATTGGTTGATATGTATGCTAAATGTGGGCAGCTACAAAAATCAAGAATGGTATTTGACTCTATGAAAGAGAAGGATGTAATTTGCTGGAATGCAATGATTTCAGGCTACGGAATGAATGGATATGCAGAATCTGCTATAGAGATATTCCAACATATGGAGGAATCAAACGTTATGCCCAATGAAATTAGCTTCCTCTCTCTTCTATCAGCTTGTGCCCATGCAGGGCTTGTTGAAGAAGGGAAATACATATTCGCAAGAATGCTGAGTTATTCTGTGCAACCCAATTTAAAGCACTACACTTGTATGGTAGATCTTTTGGGAAGGTCAGGTAATCTACAAGAAGCAGAAGATATGGTCCTATCCATGCCCATTTCTCCAGACAGCGGTGTTTGGGGAGCTTTGTTAGGTCATTGTAAAACTTACAATGAAGTTGAGATGGGAATAAGAATTGCAACGTATGCTATTGACACTGAACCAGAAAATGACGGCTACTATATAATGATGGCCAATATGTATAGCTCCATTGGGAGGTGGGAAGAAGCAGAAAATGTGAGAAGGACAATGAAAGAAAAATGTTCAATGGGAAAGAAAGCTGGTTGGAGTCTGCTCTGA 2238 0.4897 MYDAAELLRLSKHITTLESLLRFHAVTVTSGHSTNLFLASKLISLYDSLSIDHTPCSTLFHSLPHKDTFLCNSLLKSLSSRSLFPQLLSLFSRMRASNLSPNHFTLPIVFSAAAHLPLAAALHTLAAKSALLPSSAASLLSLYSRCARIDLARKLFDEIPVRDVVAWTALIVGLAHNGEPEEALRCLRHMHAHHDDDQKPNARTWEGGFLACGNLADVKQGACLHAALVKNGVASFLQSSVLDMYSKCGVPWEAYRAFCEVGRKDLLCWTSMVGVWAKVGMMGECVRLFKEMLENGLDPDGVVVGCVVSGFGNSMDVPGGKAFHGVVIRRHFVDDEKVNDSLLFMYCKFGMLSLAERLFARCRGSGGDCWNFMVFGYGRIGEDVKCVELFREMQCLGIPSESIGVASAIASCAQLGAVNLGRSIHCNVIKGFLDGNISVTNSLIEMYGKCGKMTFAWRIFNRSERDVLSWNTLISSHVHVKHHEEAVNLFNKMVREDQKPNTATLVVVLSACSHLASLDEGERVHRYINESGFRLNLPLGTALVDMYAKCGQLQKSRMVFDSMKEKDVICWNAMISGYGMNGYAESAIEIFQHMEESNVMPNEISFLSLLSACAHAGLVEEGKYIFARMLSYSVQPNLKHYTCMVDLLGRSGNLQEAEDMVLSMPISPDSGVWGALLGHCKTYNEVEMGIRIATYAIDTEPENDGYYIMMANMYSSIGRWEEAENVRRTMKEKCSMGKKAGWSLL 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01622 745 Pfam PPR repeat family 566 614 IPR002885 -
Cca03g01622 745 Pfam PPR repeat family 466 513 IPR002885 -
Cca03g01622 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 466 500 IPR002885 -
Cca03g01622 745 Gene3D Tetratricopeptide repeat domain 481 619 IPR011990 GO:0005515
Cca03g01622 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Cca03g01622 745 SUPERFAMILY TPR-like 572 729 IPR011990 GO:0005515
Cca03g01622 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 67 101 IPR002885 -
Cca03g01622 745 Pfam E motif 683 742 IPR046848 -
Cca03g01622 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 567 601 IPR002885 -
Cca03g01622 745 PANTHER - 115 314 - -
Cca03g01622 745 PANTHER - 5 191 - -
Cca03g01622 745 PANTHER - 319 514 - -
Cca03g01622 745 PANTHER - 369 744 - -
Cca03g01622 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 193 IPR002885 -
Cca03g01622 745 SUPERFAMILY TPR-like 164 728 IPR011990 GO:0005515
Cca03g01622 745 Gene3D Tetratricopeptide repeat domain 326 423 IPR011990 GO:0005515
Cca03g01622 745 Gene3D Tetratricopeptide repeat domain 7 120 IPR011990 GO:0005515
Cca03g01622 745 Gene3D Tetratricopeptide repeat domain 123 235 IPR011990 GO:0005515
Cca03g01622 745 TIGRFAM PPR: pentatricopeptide repeat domain 165 192 IPR002885 -
Cca03g01622 745 TIGRFAM PPR: pentatricopeptide repeat domain 605 637 IPR002885 -
Cca03g01622 745 TIGRFAM PPR: pentatricopeptide repeat domain 268 300 IPR002885 -
Cca03g01622 745 TIGRFAM PPR: pentatricopeptide repeat domain 469 502 IPR002885 -
Cca03g01622 745 TIGRFAM PPR: pentatricopeptide repeat domain 569 603 IPR002885 -
Cca03g01622 745 TIGRFAM PPR: pentatricopeptide repeat domain 541 568 IPR002885 -
Cca03g01622 745 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 602 636 IPR002885 -
Cca03g01622 745 PANTHER BNACNNG07920D PROTEIN 5 191 - -
Cca03g01622 745 PANTHER BNACNNG07920D PROTEIN 369 744 - -
Cca03g01622 745 PANTHER BNACNNG07920D PROTEIN 115 314 - -
Cca03g01622 745 PANTHER BNACNNG07920D PROTEIN 319 514 - -
Cca03g01622 745 Pfam PPR repeat 165 191 IPR002885 -
Cca03g01622 745 Pfam PPR repeat 640 664 IPR002885 -
Cca03g01622 745 Pfam PPR repeat 268 297 IPR002885 -
Cca03g01622 745 Pfam PPR repeat 341 366 IPR002885 -
Cca03g01622 745 Pfam PPR repeat 369 398 IPR002885 -
Cca03g01622 745 Pfam PPR repeat 441 462 IPR002885 -
Cca03g01622 745 Gene3D Tetratricopeptide repeat domain 236 325 IPR011990 GO:0005515
Cca03g01622 745 Gene3D Tetratricopeptide repeat domain 620 745 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01622 Cca-Chr3 35167105 35169650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01622 113 743 Glycoside Hydrolase AT3G49170 29.830 1.62e-89 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01622 - - gmx:100780090 1213.75