Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01621 ATGGCAACCAGAAGAACTCCGACGCTATCCAAATCCGTTTTCGCCGCCGTAACCGCTTCTACCACCTCTCGCTCCAGCTCCCGCTCCGCGCGACGACTCTTCTCCTCCCTCTCTCGTGCTTCGGACAATTCGCTTTCTCGGCCTCCGATTGTCGATGCATTCGCGGCCACCAATGTCGCCTCCGCCAAGTTCCTCTCCCTCTCTTTCGCTCGCACCTTCCACGCCACTAATCCCTCCCTCCGCTCCGCCGCAAGCTCTCAGGTGGCGCAGACAGAGTTCACAGATATGGCATGGGAGGGGATTCTTGGTGCTGTTGATGCGGCACGAGTTAGTAAACAACAAATTGTGGAGTCTGAGCACTTAATGAAAGCCCTCTTGGAGCAAAAGGATGGCTTGGCCCGAAGGATATTTACCAAGGCAGGGTTGGACAACACGTCAGTTCTACAAGCTACTGATGATTTCATTGCTCAGCAACCTAAGGTTACAGGTGACACTAGTGGTCCTGTAATAGGTTCGCATCTTAGCTCGCTCTTGGAAAATTCTCGAAAATACAAGAAAGAGATGGGTGATGAGTATGTGTCTGTGGAGCATCTTTTGCTAGCGTTTCATTCTGATAAGAGGTTTGGGCAGCAGTTATTTAAGAATCTTCAGCTTAGTGAGAAGACTTTGAACGATGCCGTTCAAGCTATTCGTGGAAGTCAAAGAGTGACCGATCAAAATCCGGAGGGGAAATATGAGGCATTGGACAAGTATGGAAATGATCTGACTGAACTTGCTAGGCGTGGCAAGCTTGATCCTGTCATAGGTCGAGATGATGAAATTCGGCGCTGTATCCAGATATTATCAAGGAGAACAAAAAACAATCCTGTTATTATTGGTGAACCTGGTGTGGGCAAAACTGCTATTGCTGAAGGATTAGCTCAACGTATAGTGCGTGGTGATGTTCCAGAGCCATTGATGAATCGAAAGTTGATCTCCCTTGATATGGGTTCATTGCTTGCTGGGGCCAAGTATCGTGGAGATTTTGAAGAAAGGTTGAAAGCTGTCCTGAAGGAAGTTACAGCATCAAATGGGCAAATAATTTTGTTTATTGATGAAATCCATACTGTTGTAGGTGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAGCCGATGCTTGGACGAGGTGAACTTCGTTGCATAGGAGCAACTACATTGAACGAGTACAGAAAATATATTGAAAAGGATCCTGCACTTGAGCGTAGATTTCAACAAGTGTTTTGCAGTCAACCATCTGTTGAAGATACAATATCCATTCTTCGTGGGTTGCGTGAACGCTATGAGTTGCATCATGGAGTCAAAATATCAGATAGTGCACTTGTTTCAGCTGCTATTCTTGCAGATCGATATATTACAGAACGCTTCTTACCGGACAAAGCCATTGATCTTGTTGATGAAGCTGCTGCAAAGCTGAAGATGGAGATCACCTCTAAGCCTACAGAATTGGATGAGATAGACAGGGCAGTATTGAAATTGGAGATGGAAAAGCTCTCTTTGAAAAATGACACTGACAAGGCATCTAAAGAAAGATTAAGTAAGCTTGAAAATGATTTGAGTTTACTTAAGCAGAAGCAAAAAGAATTGATAGAAAAATGGGACAATGAAAAAGTTTTTATGACTCGGATAAGGTCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAGATGGAAGCTGCTGAACGTGATTATGACCTCAACCGTGCTGCTGAGCTTAAGTATGGAACCTTGATGTCCCTTCAACGCCAATTAGAAGAAGCTGAAAAGAACCTAGCTGAATTCCGAGAGTCTGGACAATCTTTACTTCGCGAAGAGGTCACTGACCTTGATATTACAGAGATTGTTAGTAAATGGACTGGTATTCCATTATCAAACCTCCAGCAAACAGAGAGAGAAAAGTTAGTCTTGCTGGAACAGGTTCTTCACAAGAGAGTGGTTGGTCAGGACATTGCTGTTAAATCTGTGGCTGATGCAATTCGCCGTTCAAGGGCTGGATTGTCTGATCCAAATCGGCCAATTGCAAGCTTCATGTTCATGGGTCCAACTGGTGTTGGCAAAACTGAGCTTGCCAAGGCTTTGGCTGGTTACTTGTTTAACACTGAAAATGCTCTTGTTAGAATTGATATGAGTGAGTACATGGAGAAACATGCCGTTTCACGTTTAGTTGGAGCCCCTCCCGGTTATGTTGGTTACGAAGAAGGTGGTCAGCTAACTGAAGTGGTCCGGAGAAGACCCTACTCTGTGGTACTATTTGATGAAATCGAGAAGGCACATCATGATGTCTTCAACATCTTGTTACAATTGTTGGATGATGGTAGGATTACTGATTCTCAAGGAAGGACTGTCAGCTTCACGAATAGTGTTGTGATTATGACTTCAAACATTGGTTCTCATTACATACTTGAAACTCTTCGTAATACACAAGATGATAAAACTGCAGTCTATGATCAAATGAAAAACCAAGTCGTTGAGTTGGCTAGGCAAACATTTCGTCCTGAGTTCATGAATCGTATTGATGAATATATTGTGTTCCAGCCTCTGGATTCCGAACAGATAAGCAAAATAGTGGAGCTCCAGATGGAGCGAGTGAAAAACAGGCTCAAGCAAAAGAAAATTGATCTTCATTACACAGAAGAAGCTGTTAAACTTCTTGGTGTACTGGGTTTTGATCCAAATTTTGGGGCAAGACCAGTGAAAAGAGTGATACAACAATTGGTTGAAAATGAAATTGCCATGGGAGTTCTAAGGGGAGATTACAAAGAAGAGGACTCAATCATTGTTGATGCGGATGTAACTCCATCGGGCAAAGAGCGTCCTCCTCTAAAGAGATTACTTATTAAGAAGTTGGACAGTCAAGTTGCGGATGCCATGGCTGTCAATGACTAA 2934 0.4369 MATRRTPTLSKSVFAAVTASTTSRSSSRSARRLFSSLSRASDNSLSRPPIVDAFAATNVASAKFLSLSFARTFHATNPSLRSAASSQVAQTEFTDMAWEGILGAVDAARVSKQQIVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATDDFIAQQPKVTGDTSGPVIGSHLSSLLENSRKYKKEMGDEYVSVEHLLLAFHSDKRFGQQLFKNLQLSEKTLNDAVQAIRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKYRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVFCSQPSVEDTISILRGLRERYELHHGVKISDSALVSAAILADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLENDLSLLKQKQKELIEKWDNEKVFMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLAEFRESGQSLLREEVTDLDITEIVSKWTGIPLSNLQQTEREKLVLLEQVLHKRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNSVVIMTSNIGSHYILETLRNTQDDKTAVYDQMKNQVVELARQTFRPEFMNRIDEYIVFQPLDSEQISKIVELQMERVKNRLKQKKIDLHYTEEAVKLLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDYKEEDSIIVDADVTPSGKERPPLKRLLIKKLDSQVADAMAVND 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01621 977 Pfam C-terminal, D2-small domain, of ClpB protein 863 943 IPR019489 -
Cca03g01621 977 Coils Coil 586 620 - -
Cca03g01621 977 ProSitePatterns Chaperonins clpA/B signature 1. 381 393 IPR018368 GO:0005524
Cca03g01621 977 Gene3D - 640 861 IPR027417 -
Cca03g01621 977 CDD AAA 662 810 - -
Cca03g01621 977 SUPERFAMILY Double Clp-N motif 92 243 IPR036628 -
Cca03g01621 977 Coils Coil 521 548 - -
Cca03g01621 977 Gene3D - 90 235 IPR036628 -
Cca03g01621 977 Pfam AAA domain (Cdc48 subfamily) 687 856 IPR003959 GO:0005524|GO:0016887
Cca03g01621 977 ProSitePatterns Chaperonins clpA/B signature 2. 722 740 IPR028299 -
Cca03g01621 977 TIGRFAM chaperone_ClpB: ATP-dependent chaperone protein ClpB 93 946 IPR017730 GO:0005737|GO:0009408|GO:0042026
Cca03g01621 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 943 IPR027417 -
Cca03g01621 977 Coils Coil 559 579 - -
Cca03g01621 977 Pfam ATPase family associated with various cellular activities (AAA) 291 424 IPR003959 GO:0005524|GO:0016887
Cca03g01621 977 Gene3D - 430 635 IPR027417 -
Cca03g01621 977 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 692 710 IPR001270 GO:0005524
Cca03g01621 977 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 737 755 IPR001270 GO:0005524
Cca03g01621 977 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 766 784 IPR001270 GO:0005524
Cca03g01621 977 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 799 813 IPR001270 GO:0005524
Cca03g01621 977 PANTHER BNAC09G42450D PROTEIN 66 973 - -
Cca03g01621 977 Gene3D - 863 951 - -
Cca03g01621 977 PANTHER ATP-DEPENDENT CLP PROTEASE 66 973 - -
Cca03g01621 977 SMART AAA_5 285 429 IPR003593 -
Cca03g01621 977 SMART AAA_5 688 830 IPR003593 -
Cca03g01621 977 Gene3D - 236 429 IPR027417 -
Cca03g01621 977 ProSiteProfiles Clp repeat (R) domain profile. 88 233 IPR004176 -
Cca03g01621 977 Pfam Clp amino terminal domain, pathogenicity island component 104 155 IPR004176 -
Cca03g01621 977 Pfam Clp amino terminal domain, pathogenicity island component 183 232 IPR004176 -
Cca03g01621 977 Pfam AAA lid domain 429 531 IPR041546 -
Cca03g01621 977 SMART ClpB_D2_small_2 863 957 IPR019489 -
Cca03g01621 977 CDD AAA 268 425 - -
Cca03g01621 977 Coils Coil 499 519 - -
Cca03g01621 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 636 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01621 Cca-Chr3 35159495 35166687 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01621 K03695 - gmx:100782242 1739.16