Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01620 ATGTTAACGACTGATATCACATTGTCGCATCCGGAATTGCTAGAGCCCAGTTGTAAACGACACCTCCCGTGTAGTTGTTGCTCAAATCCCCCATCACCGACTCCAGATCGCTGCTACTCGCTCCTCTTTCCGTTCACTCCAAGATCTACTTCAATCTCCTCCGCGCATCGCTCATTCCAACCTCTACTCGCTCAAATCCTCTTCAGATCTGGGGGGTTTGATTGCGCTTTTCATTCTGTTGCTCGGATTCCTTCGTTCGAAATGTCGATTTTACCGAAAGGCGATTCGGTTCAAATCAGAGAGGTATGGAACGACAACCTCGAGGAGGAGTTCGCGTTGATCCGCGGAATTGTGGACGAGTACAACTACGTGGCCATGGATACCGAGTTCCCCGGCGTGGTTCTCCGTCCGGTGGGGAATTTCAAGAACATCAACGACTACAACTACCAGACGCTGAAGGACAACGTGGACATGCTGAAGCTGATCCAGTTAGGCCTCACGTTCTCCGACGCGCACGGGAACCTCCCTTCCTGCGGCACGGAGAGTCCCTGCATCTGGCAATTCAACTTCCGCGAGTTCAACATCAGCGAGGACATCTTCGCGAGCGACTCGATCGAGTTGTTGCGCCAGGGCGGGATCGACTTCAAGAAGAACAGCGAGAAAGGGATCGACGTGAACCGGTTCGGGGAGCTTCTGATGTCGTCGGGGATTGTGTTGAACGAGGCCGTGCATTGGGTGACGTTCCACAGCGGCTACGATTTCGGTTACCTCCTGAAGCTGTTGACATGCCGGAGCTTGCCGGAGACGCAGGCCGGGTTCTTTGAACTGATCAAGATTTATTTTCCGATGGTTTATGATATTAAGCACTTGATGAAGTTCTGCAACAGCCTCCACGGTGGTTTGAACAAGCTTGCGGAGTTGTTGGAGGTGGAGAGGGTTGGTGTGTGCCATCAGGCTGGCTCTGATAGTTTACTCACTGCGTGTACATTTAGGAAGTTGAGGGACACGTTCTTCAATGGGTCGACGGAGAAGTATTCTGGTGTGTTGTATGGTTTAGGTGTTGAAGGTCTGGCTGTTAAATCTCGTCACTGTCCTGCTCTGAGCCTCGCTCGGGTTCCCGCGAATTTCCGAAACTCCTTTTTCCAGATCGCCGCAAAATCTCGCAATCTACGGATTTCTATCATTTTAGCTTAA 1194 0.5151 MLTTDITLSHPELLEPSCKRHLPCSCCSNPPSPTPDRCYSLLFPFTPRSTSISSAHRSFQPLLAQILFRSGGFDCAFHSVARIPSFEMSILPKGDSVQIREVWNDNLEEEFALIRGIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDAHGNLPSCGTESPCIWQFNFREFNISEDIFASDSIELLRQGGIDFKKNSEKGIDVNRFGELLMSSGIVLNEAVHWVTFHSGYDFGYLLKLLTCRSLPETQAGFFELIKIYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTACTFRKLRDTFFNGSTEKYSGVLYGLGVEGLAVKSRHCPALSLARVPANFRNSFFQIAAKSRNLRISIILA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01620 397 Pfam CAF1 family ribonuclease 102 223 IPR006941 -
Cca03g01620 397 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 88 356 IPR039637 GO:0004535|GO:0030014
Cca03g01620 397 Gene3D - 86 355 IPR036397 GO:0003676
Cca03g01620 397 SUPERFAMILY Ribonuclease H-like 99 352 IPR012337 -
Cca03g01620 397 PANTHER CCR4-ASSOCIATED FACTOR 1 HOMOLOG 10-RELATED 88 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01620 Cca-Chr3 35115308 35122755 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01620 K12581 - gmx:100798365 525.013