Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01609 ATGGGTTCCAAGAAGAAACACTCTGAAGGCATCGCTTTGTTGTCCATGTACAATGACGATGGAGACGAAGAAATGGAGGACGCTGAAGAAGAAGGTGATGCTGGGATGTTCATGGAATCCAGAGATGCAAGATTTACGGCGGAGGAAGATGCATCCAATAAAACAGGGTTGGATGGTTCCGGTAATGAGGAAGAGAGATCAACTCCGGCAGAGAAGATTAGGGTTGGGGCTTCTACTCCGCAGACAAACACCTTGGTTTCGCCACTGCCGGAGCAATCGAAGAATGCTCGGAGAGGTGCACTTACAATAGTGGATTATGGGCATGACGAAGTGGCAATGTCACCTGAGCCTGAGGAGGGAGAGATATATGGTAGCGGCAGAGTCATGTTTGGCGACCAGCTTCACGTTAACAATGGTGATTTGCTAGACAGAGCACCATTGGGATCAGTCCAAGTTATGACACTTAGCAATCAAGCTAACACTGAGTTCTCTGAGCCACTGAAATCTGATACCATGAACAATGATGCTGTGATCAGATCAGACGATGCAGAACTTGGAGAAGCAGATCAAGATGAGCAAAAATATGTAGATCCATTGGATAAATTTCTTCCTCCCCCACCAAAAGTTAAATGCTCCGAGGAGCTACAAAGAAAAATAAATAAATTCCTAGAGTACAAGAAGGCTGGAAAAAGTTTTAATGCAGAAGTTCGCAACAGAAAGGACTATCGAAACCCCGACTTCTTACTGCATGCAGTGAGGTACCAGGATATTGATCAAACAGGGTCGTGCTTCAGTAAAGATGTATTTGACCCTCATGGATATGATCCAAGCGACTTCTATGATGGAATAGAAGCTGATATGAGGCGCGAAAGTGAGAGGAAAGAGCAAGAGAAGAAGAAAGCACAGAAGGTTGAATTTATTTCAGGTGGTGCGCAACCAGGAATTATACCTAGTGCTCCTAGGATTAGCATGCCTGTTGCAGGTGCTTCTACTGTGAATGCAAGTGGTTTGCCTTTGGTGCCTCCTACAGCTGATACTATTAATCGTGATGGTAGACAGAATAAAAAATCAAAATGGGACAAGGTGGATGGTGATCGAAAAAATTCTCTGCCTTCTGCGGGTCTGGATTCTGTATCTACTACTGGAGCTCATGCAGCAATTTTAACTGCTGCTAATGCTGGTGGTGGATACATGCTATTTGCGCAACATAAACGGCGAGAGGCAGAGGAGAAAAGATCTAGTGAAAGGTGGTTGGACAGAAAATCGTGA 1269 0.4476 MGSKKKHSEGIALLSMYNDDGDEEMEDAEEEGDAGMFMESRDARFTAEEDASNKTGLDGSGNEEERSTPAEKIRVGASTPQTNTLVSPLPEQSKNARRGALTIVDYGHDEVAMSPEPEEGEIYGSGRVMFGDQLHVNNGDLLDRAPLGSVQVMTLSNQANTEFSEPLKSDTMNNDAVIRSDDAELGEADQDEQKYVDPLDKFLPPPPKVKCSEELQRKINKFLEYKKAGKSFNAEVRNRKDYRNPDFLLHAVRYQDIDQTGSCFSKDVFDPHGYDPSDFYDGIEADMRRESERKEQEKKKAQKVEFISGGAQPGIIPSAPRISMPVAGASTVNASGLPLVPPTADTINRDGRQNKKSKWDKVDGDRKNSLPSAGLDSVSTTGAHAAILTAANAGGGYMLFAQHKRREAEEKRSSERWLDRKS 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01609 422 MobiDBLite consensus disorder prediction 292 312 - -
Cca03g01609 422 Coils Coil 280 304 - -
Cca03g01609 422 MobiDBLite consensus disorder prediction 74 91 - -
Cca03g01609 422 MobiDBLite consensus disorder prediction 19 33 - -
Cca03g01609 422 MobiDBLite consensus disorder prediction 34 51 - -
Cca03g01609 422 PANTHER TRANSCRIPTIONAL REGULATOR PROTEIN HCNGP 1 394 IPR012479 GO:0006355
Cca03g01609 422 MobiDBLite consensus disorder prediction 1 97 - -
Cca03g01609 422 Pfam HCNGP-like protein 203 296 IPR012479 GO:0006355
Cca03g01609 422 MobiDBLite consensus disorder prediction 349 367 - -
Cca03g01609 422 MobiDBLite consensus disorder prediction 332 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01609 Cca-Chr3 34960748 34971028 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01609 - - gmx:100527074 643.269