Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01604 ATGATGGAATCCGGGGCTCACTTTTGCAACAATTGTGGTGAACAAGTTGGACTTGATGCCAATGGGGAAGTGTTTATAGCTTGCCATGAGTGTTATCTTCCAATTTGCAAGGCTTGTTTTGAATATGAAATCAATGAGGGCCGAAAGGTCTGCTTGAGATGTGCCACTCCCTATGCTGATAGAGCAAAAGATAATGATGACACCAAGGTTTATGGAAATCAATCCACAATGGCTGCTCAGATCGATGTTTCTCAGGATGTTGGGCTTCATGCTAGGCATATCAGTACTGTATCCACAGTGGATAGTGAATTAAATGATGAATCTGGGAATCCGATCTGGAAAAATAGAGTGGAGAGCTGgaaggagaaggataaaaagaagaagaagaaaaagTCTGCTCCTAAGACTGAAAATGAGGCGCCAATTCCACCAGAACAACAGATTGAAGAAATACAGTCCTCAGAGGCTGCTGCTGCTGAGCCACTTTCAGTCATCATTCCAGTCTCAAAAACGAGACTCACACCATACAGAATTGTGATAGTCGTGCGACTGATTATCTTGGGTCTTTTCTTCCATTATCGAGTTACAAATCCTGTTGACAGTGCTTTTGGCCTGTGGATGACATCCATCATCTGTGAGATCTGGTTTGCATTTTCATGGGTGTTAGATCAGTTCCCTAAGTGGTCTCCCATCAATAGGGAAACCTATATTGACAGGCTTTCTGCAAGGTATGAAAGACCTGCTGAACCCTCTCAGCTTGCTGCTGTGGATTTCTTTGTCAGTACAGTGGATCCTCTGAAAGAACCTCCTTTGATCACAGCTAATACGGTGCTTTCTATTCTTGCTGTGGACTACCCTATGGATAAAGTATCCTGTTATGTGTCAGATGATGGTGCTGCAATGCTCACGTTTGAGTCCCTTGTGGAGACAGCTGACTTTGCAAGAAAGTGGGTTCCATTTTGCAAAAAGTTTTCAATTGAACCGCGAGCACCTGAGTTCTACTTCTCTCAGAAGATTGACTACCTGAAGGACAAAGTACAACCTTCTTTTGTGAAGGAACGTAGAGCAATGAAGAGAGACTATGAAGAGTTTAAAGTGCGAATTAATGCTTTGGTAGCAAAGGCTCAGAAAACACCAGATGAAGGATGGACTATGCAAGATGGAACTTCATGGCCAGGAAATAACTCACGTGATCACCCTGGCATGATTCAGGTTTTCCTTGGTCACAGTGGTGCCCATGACATAGAAGGAAATGAACTTCCTAGGTTGGTGTATGTTTCTAGAGAGAAAAGGCCAGGTTACCAACACCACAAAAAGGCTGGTGCTGAAAATGCATTGGTGAGGGTGTCTGCAGTTCTCACAAATGCTCCCTTCATTCTCAATCTTGATTGTGATCATTATGTGAATAATAGCAAGGCTGTTCGGGAAGCAATGTGTTTTCTGATGGATCCAGTAGTTGGTAGAGATCTGTGTTATGTGCAGTTTCCCCAGAGATTTGATGGTATTGATCGTAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTTAACATGAAAGGACTTGATGGCATTCAAGGACCTATGTATGTGGGAACTGGATGTGTTTTCAATAGACAAGCACTTTATGGCTATAGCCCACCTTCTATGCCCAAATTACCAAAATCATCATCCTGTTGTTGCTGCCCTTCAAAGAAGCCATCCAAAGATATCTCAGAACTTTATAGAGATGCAAAGAGGGAAGAACTTGATGCTGCCATTTTCAACCTCAGGGAGATTGACAATTATGATGAATATGAGAGGTCAATGCTGATTTCACAAATGAGCTTTGAGAAAACATTTGGTCTGTCCACTGTTTTCATTGAATCTACACTAATGGAGAATGGAGGGGTCCCTGAATCTGCCGATCCCTCAATGCTGATCAAAGAAGCCATTCATGTTATTGGCTGTGGATATGAAGAGAAGACTGCATGGGGAAAAGAGATTGGTTGGATATATGGTTCAGTGACTGAGGATATCTTAACGGGGTTCAAGATGCAATGCCGGGGATGGAGGTCGGTTTACTGCATGCCCTTAAGGCCTGCATTCAAAGGATCAGCACCAATCAATCTTTCTGATCGGTTGCACCAAGTTCTTCGATGGGCCCTTGGATCAGTTGAAATTTTCTTTAGTAGACACTGCCCCCTATGGTATGGTTTTGCCGGAGGTCGCCTCAAATGGCTGCAGAGACTGGCTTACATAAACACCATTGTCTACCCATTTACATCCCTTCCTCTTGTTGCTTATTGTACGTTACCTGCAATTTGCCTCCTCACAGGAAAATTCATCATACCAACGCTTTCCAACCTTGCAAGTGCTCTCTTTCTTGGACTTTTCCTCTCCATTATAGTCACTAGTGTGCTTGAACTGCGGTGGAGTAGTGTGACCATTGAAGCTTTGTGGCGTAATGAGCAGTTCTGGGTGATTGGAGGAGTTTCAGCCCATCTGTTTGCAGTGTTCCAGGGATTCCTGAAGATGTTGGCTGGTGTTGACACCAATTTCACTGTCACTGCCAAAGCAGCTGATGACACTGAGTTTGGTGAACTATACATCATCAAGTGGACCACACTCTTAATTCCTCCAACAACTCTCATCATTATCAACATGGTTGGTGTTGTGGCTGGATTTTCTGATGCACTGAATGGAGGATATGAGTCTTGGGGACCACTTTTTGGAAAGGTTTTCTTTGCCTTCTGGGTTATTTTTCATCTCTATCCATTCCTTAAGGGTCTCATGGGTCGCCAAAACCGTACTCCAACCGTTGTTATTCTGTGGTCAGTGTTGTTGGCTTCTGTCTTCTCTCTGGTGTGGGTCAAGATTAATCCCTTTATCAGCAGACCTGACAGTGCAACCATCTCCCAGACATGCACTTCTATCGATTGCTAA 2928 0.4317 MMESGAHFCNNCGEQVGLDANGEVFIACHECYLPICKACFEYEINEGRKVCLRCATPYADRAKDNDDTKVYGNQSTMAAQIDVSQDVGLHARHISTVSTVDSELNDESGNPIWKNRVESWKEKDKKKKKKKSAPKTENEAPIPPEQQIEEIQSSEAAAAEPLSVIIPVSKTRLTPYRIVIVVRLIILGLFFHYRVTNPVDSAFGLWMTSIICEIWFAFSWVLDQFPKWSPINRETYIDRLSARYERPAEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPMDKVSCYVSDDGAAMLTFESLVETADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEFKVRINALVAKAQKTPDEGWTMQDGTSWPGNNSRDHPGMIQVFLGHSGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPVVGRDLCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPMYVGTGCVFNRQALYGYSPPSMPKLPKSSSCCCCPSKKPSKDISELYRDAKREELDAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSTVFIESTLMENGGVPESADPSMLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMQCRGWRSVYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPLWYGFAGGRLKWLQRLAYINTIVYPFTSLPLVAYCTLPAICLLTGKFIIPTLSNLASALFLGLFLSIIVTSVLELRWSSVTIEALWRNEQFWVIGGVSAHLFAVFQGFLKMLAGVDTNFTVTAKAADDTEFGELYIIKWTTLLIPPTTLIIINMVGVVAGFSDALNGGYESWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTVVILWSVLLASVFSLVWVKINPFISRPDSATISQTCTSIDC 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01604 975 Pfam Cellulose synthase 256 966 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cca03g01604 975 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Cca03g01604 975 MobiDBLite consensus disorder prediction 123 146 - -
Cca03g01604 975 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 2 975 - -
Cca03g01604 975 Pfam Zinc-binding RING-finger 5 60 IPR027934 -
Cca03g01604 975 SUPERFAMILY RING/U-box 2 63 - -
Cca03g01604 975 SUPERFAMILY Nucleotide-diphospho-sugar transferases 270 767 IPR029044 -
Cca03g01604 975 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 403 547 IPR029044 -
Cca03g01604 975 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01604 Cca-Chr3 34911865 34918606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01604 1 975 Glycosyltransferase AT4G18780 81.523 0.0 1664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01604 K10999 - gmx:100806522 1841.24