Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01594 ATGGCAACTCTTAATTGTCTGCCTCCCACTGTGGAACCAAAAGTCTCAGAGCACATGCCCCAAATCATTGATATGATTGAGAAGATTCTTAATAATGGGTATGCCTACGTTGTTGAAGGGGATGTATACTTTAATGTAGAAAAATTTCCAGAATATGGGAAACTATCTAGTAGAGATCTAGAAGATAATCGAGCTGGTGAGAGGGTTGCAGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAACCTGGGGAGCCATTTTGGGAGAGTCCTTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCCATGAGTGCCACTTATCTTGGTTACTCTTTTGACATCCACGGTGGAGGAATCGACCTTGTGTTTCCTCACCATGAGAATGAAATTGCTCAGAGTTGTGCTGCTTGTAAGAAAAGTGATATTAGCGTATGGATGCACAATGGTTTTGTCACCATCGACTCTGTGAAGATGTCGAAATCTTTGGGAAATTTTTTCACAATACGTCAGGTTATAGATGTTTACCATCCACTGGCTTTGAGATATTTTCTGATGAGCGCTCATTATCGATCTCCTATCAACTACTCAAATATACAGCTTGAAAGTGCTTCAGACCGTGTTTTTTATGTATATGAGACATTACATGAATGTGAAAGCTTTTTGAATCAGCATGATCAGACAAATAGGAAGGATTCTGTCCCACCAGATACTTTGAATATTATTAATAAGTTCCATGATGTTTTTCTGACCTCAATGTCGGATGATCTTCACACTCCAGTTGTATTGGCTGGAATGTCTGATCCATTAAAATCAATTAATGATTTGCTGCATACCCGTAAGGGGAAAAAACAACAATTTCGAATAGAATCACTTGCAGCTTTGGAGAAGAGCATCAGGGATGTCCTTATTGTTTTAGGACTTATGCCTGCAAGTTACTCCGAGGTTTTACAGCAGCTGAAGGAAAAAGCTTTAATGCGTGCAAACTTGACAGAAGACGAAGTGTTGCAGAAAATTGAAGAAAGGGCTGCTGCCAGAATACAAAAGGAGTATGCTAAATCGGATGCAATAAGGAAGGATATGGCTGTTCTTGGTATTACTCTTATGGACAGTCCAAATGGCACAACTTGGAGACCTACCATTCCTCTTCCGCTTCAAGAGCACCAGATTGATTGA 1200 0.405 MATLNCLPPTVEPKVSEHMPQIIDMIEKILNNGYAYVVEGDVYFNVEKFPEYGKLSSRDLEDNRAGERVAVDSRKKNPADFALWKSAKPGEPFWESPWGPGRPGWHIECSAMSATYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKKSDISVWMHNGFVTIDSVKMSKSLGNFFTIRQVIDVYHPLALRYFLMSAHYRSPINYSNIQLESASDRVFYVYETLHECESFLNQHDQTNRKDSVPPDTLNIINKFHDVFLTSMSDDLHTPVVLAGMSDPLKSINDLLHTRKGKKQQFRIESLAALEKSIRDVLIVLGLMPASYSEVLQQLKEKALMRANLTEDEVLQKIEERAAARIQKEYAKSDAIRKDMAVLGITLMDSPNGTTWRPTIPLPLQEHQID 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01594 399 PANTHER CYSTEINYL-TRNA SYNTHETASE 1 396 IPR024909 -
Cca03g01594 399 SUPERFAMILY Nucleotidylyl transferase 1 210 - -
Cca03g01594 399 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 243 387 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca03g01594 399 TIGRFAM cysS: cysteine--tRNA ligase 1 386 IPR015803 GO:0004817|GO:0005524|GO:0006423
Cca03g01594 399 Gene3D - 206 387 - -
Cca03g01594 399 PRINTS Cysteinyl-tRNA synthetase signature 91 109 IPR024909 -
Cca03g01594 399 PRINTS Cysteinyl-tRNA synthetase signature 122 143 IPR024909 -
Cca03g01594 399 Gene3D HUPs 1 205 IPR014729 -
Cca03g01594 399 Pfam tRNA synthetases class I (C) catalytic domain 1 212 IPR032678 -
Cca03g01594 399 PANTHER CYSTEINE--TRNA LIGASE, CHLOROPLASTIC/MITOCHONDRIAL 1 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01594 Cca-Chr3 34739097 34743386 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01594 K01883 - gmx:100786700 769.229