Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01588 ATGAAGCAGGCTTCGTCCGAGGCAGTTCCGTCGCTATCCTCCGCGCCGTCGTTCAcggaggcggcggcgacgtcgtcgtcttcggcggcggcggcggaggacctggcggtggggtcgcgggatggcggcggcgcgcaggagacggtggcggtggATCGGCGAGGCGAGTACTCGGCGGTGTGCCGATGGACGGTGCACAATTTCCCGAGAATAAAGGCTAGGGCACTGTGGAGCAAGTACTTCGAGGTAGGCGGTTACGATTGTCGTTTGCTAATATACCCCAAGGGTGACTCACAGGCGCTGCCAGGTTACATCTCTATCTACCTCCAAATCATGGACCCTCGCGGCACCTCCTCCTCCAAATGGGACTGTTTCGCGAGCTATCGTTTGGCAATCGTCAACGTAGCCGACGATTCCAAAACGATTCACCGCGATTCCTGGCACCGATTCTCCAGCAAGAAGAAATCGCACGGCTGGTGCGATTTCACGCCCTCCTCCACTGTCTTCGACCCCAAATTGGGCTACCTCTTCAACACCGATTCAGTTTTGATCACTGCGGATATTCTCATTCTCAACGAGTCCGTTAATTTCACGCGTGACAACAATGAGTTGCAGAACTCCTCTTCGTCCTCCTCGTTGTCCTTGACGGGCTCCTCCGGCGTTGCGGGTCCCGTTTCCGATGTTTTGAGTGGGAAATTCACTTGGAAAGTACATAATTTCAGTTTGTTCAAGGAGATGATCAAGACGCAGAAGATAATGAGTCCTGTTTTCCCTGCTGGGGAGTGTAATTTGAGGATTAGTGTGTACCAAAGCTCGGTGAATGGGGTTGAGTATTTGTCCATGTGTTTGGAGAGCAAGGATACGGATAAGACTGTTGTGTTGTCTGATAGGAGTTGCTGGTGTTTGTTTAGGATGTCTGTGTTGAACCAGAAGCCTGGTTCCAATCACATGCATAGGGATTCATATGGCCGGTTCGCGGCCGATAATAAGAGTGGCGACAATACCAGCTTGGGATGGAATGATTACATGAAGATGTCGGATTTTATCGGCACGGATTCGGGGTTCTTGGTGGATGACACTGCAGTTTTTAGCACCTCGTTTCATGTGATCAAGGAGTTTAGCAGCTTCTCCAAAAATGGGGCTGTGATTGCTGGGAGGAGTGGGAGTGGTGCAAGGAAGTCTGATGGCCATATTGGAAAGTTCACTTGGAGGATTGAGAATTTTACTAGGTTGAAGGATTTGCTGAAGAAGAGGAAAATCACTGGTCTATGCATCAAGAGCAGGAGGTTTCAGATTGGAAATAGGGATTGTCGACTTATTGTTTATCCTCGAGGGCAGTCTCAGCCACCATGCCACCTTTCAGTGTTTCTTGAAGTTACAGATTCAAGAAATACTTCCAGTGACTGGAGTTGTTTTGTTAGTCATCGTTTGTCAGTTGTGAATCAGAGGATGGAGGATAAATCTGTCACCAAGGAATCTCAGAACCGCTACTCTAAAGCTGCAAAGGATTGGGGTTGGCGTGAATTTGTGACACTTACCAGTCTCTTTGATCAAGATTCAGGTTTTCTTGTCCAGGACACTGTCATATTCTCTGCTGAAGTTCTTATATTGAAAGAGACATCAATAATGCAGGATTTTGCTGAGCATGAATCCGAGTTAAGCAGCAGTGGCTCTCCTGTTGATGGCAAAAGAAGTTCGTTTACATGGAAAGTGGAGAATTTCCTGTCGTTTAAGGAAATAATGGAGACTCGAAAAATATTCAGTAAATTCTTTCAGGCTGGTGGATGTGAACTTCGGATTGGTGTATACGAGTCATTTGACACCATATGTATTTATTTAGAGAGTGACCAGGCTGTAGGTAGTGATCCAGATAAAAACTTCTGGGTCAGATACAGGATGGCTGTTGTGAATCAAAAGAACCCAGCCAAGACAGTGTGGAAAGAATCTTCTATTTGCACAAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATGTTAGAAGCAGATGCAGGATTTCTTGTACGTGACACTGTTGTTTTTGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGACTTAGAGGTTTTAGCATCAGAGGATGATCAGGATGCATTGACAACTGATCCTGATGAGCTCATCGACTCTGAAGACAGTGAAGGGATAAGTGGCGATGAGGAAGATATTTTCAGAAATCTTCTTTCCAGAGCTGGGTTCCATTTAACATATGGAGATAATCCTTCACAGCCACAGGTTACTTTAAGGGAGAAACTTTTGATGGATGCTGGTGCGATTGCAGGGTTTCTTACTGGACTTCGAGTTTATCTAGATGATCCTGCAAAAGTTAAGCGTCTGCTTCTTCCTACCAAGCTCTCTGGTAGTTGTGATGGAAAGAAGGCCACCAAAGCTGATGAATCTTCACCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTGCAGCAAGCAATCATTGATTTATTATTGGATATAATGGTGGAGTGCTGCCAGCCTTCTGAAGTGGGTCCTGTTGCTGATTCTGTTGAATCATGCTCTAAACCTTCTTCAGATGGCAGTGGAGCTGCTAGTCCTCTTGAGTGTGAAAGAGAAAATGGAACAATGGAGTCTGCACAAGTTCCTGTTAATGAGAGATTGGATTCTGTTGTTGAAGAAAGCAGTAATACATCTGCTGTGCAGAGCTCTGATTTAAATGGGAAAGGTATTCAGGGAAAAGCTCTTCCTGGACAGCCTATTTGTCCACCAGAGACATCTGCCACTGCTTCAGAAAATGCATCCTTTCGGTCAAAGACCAAGTGGCCACAACAGTCTGAGGAGCTCTTAGGTTTGATTGTAAACTCACTAAGAGCTTTGGATGGGGCTGTTCCGCAAGGCTGTCCAGAACCAAGACGGCGACCACAATCTGCTAAAAAAATTGCTCTTGTATTGGACAAGGCTCCTAAGCATTTGCAAGCAGACCTTGTTGCTCTAGTGCCTAAATTGGTTGAGCAGTCAGAACACCCACTAGCTGCCTATGCTCTTCTTGAGCGACTTCAAAAGCCAGATGCAGAACCTGCTTTACGAATACCTGTTTTTGGGGCTCTTAGTCAATTGGAGTGTGGTAGTGAAGTATGGGAACGCATTCTGTTTCAGTCATTTGAGCTTTTGACAGACTCAAATGATGAACCCCTCGCTGCAACAATAGATTTTATATTCAAAGCGGCATCTCAATGTCAACACCTCCCTGAAGCAGTTAGGTCTGTTCGTGTCAGGCTGAAAAATCTAGGTCTTGAGGTGTCGCCTTGTGTCCTTGACTTTTTGAGTAAGACTATAAATAGTTGGGGGGATGTTGCTGAAACCATACTTAGGGACATTGATTGTGATGACGATTATGGTGACAGTTGCTCAGCTCTGCCATGTGGGATATTCTTATTTGGTGAACATGGCACTGCTCCTAGTGGACTGCATGTGATTGATGAGCAGGCTTATCAAGCTAGTCGTCATTTTTCTGATATTTATATACTGTTTGAGATGTTATCTATTCCTTGCCTTGTTGCTGAAGCTTCTCAAACATTTGAGAGAGCTGTAGCTCGAGGTGCAATAAGTGCTCAGTCTGTGGCCCTGGTTTTGCAAAGCCGTCTTTCCCAAAGATTAAACAATAATGGCGGATATGTTTCTGAAAATTTCCAACATTCAGATGGTGCTTCAGAGGGAGATGCCTGTGAGCAATTGGGAGTTCAAAGGGATGAATATACTTCTGTTCTTGGTCTTGCTGAAAATTTGGCCCTCTCTAGAGACTCATGTGTGAAAGAATTTGTGAAATTGCTCTACATGATAATGTTTCGATGGTTTGCCAATGAATCATATCGGGGGAGGATGCTGAAGAGGCTTGTTGACCGTGCCACTAGCAATACTGACAATGGTCGAGAAGTGGATTTTGATTTGGATATCTTAGTTACTTTGGTCTGTGAGGAGCAGGACTTTATCAGGCCTGTTTTGAGTATGATGCGTGAAGTTGCTGAACTTGCTAATGTTGATCGGGCTGCTCTATGGCACCAGTTATGTGCTAGTGAAGACGAAATTATTCGTGTTCGTGAAGAAAGCAAAACTGAGATTTCTAATATGGCCAAGGAAAAAGCTATTATATCACAAAAGCTGAGTGAATCTGAGGCCACAAACAATCGTCTGAAGTCTGAAATGAGGGCCGAGATGGATCGGTTTTCTCGGGAAAAGAAGGAACTAGCAGAACAAGTTCAAGAAGTTGAGAGTCAGCTTGAATGGCACCGCTCAGAACGGGATGACGAAATTGCCAAGCTCTCTGCAGAGAAGAAAGCTCTTCATGACCGTTTGCATGATGCAGAGTCACAACTTTCTCAATTGAAGTCTCGGAAACGTGATGAACTAAAGAAAGTAGTCAAGGAGAAAAATGCTCTTGCTGAAAGATTGAAGAATGCTGAAGCCGCACGCAAGAGATTTGATGAAGAACTGAAAAGATTTGCAACAGAGAATGTGACTCGGGAAGAGATCCGGCAATCACTTGAAGATGAAGTCCGTAGATTGACTCAAACAGTTGGGCAAACTGAAGGAGAAAAGCGGGAGAAGGAAGAGCAGATTGCTAGGTGTGAAGCATATATTGATGGCATGGAATCAAAGTTGCAAGCATGCCAGCAATATATTCATACACTTGAGGCCTCACTCCAGGAGGAAATGTCACGACATGCCCCTCTATATGGTGCTGGTTTGGAGGCTTTATCACTGAAAGAGTTGGAAACACTATCACGAATTCATGAAGATGGGCTTAGGCAGATCCATGCCCTTCAACAGCGCAAGGGGAGTCCTGCTGGGAGCCCTCTAGTGAGTCCCCATGCTCTCCCTCACAACCATGGATTATATCCAGCTGCCTCACCCCCAATGGCCGTGGGACTTCCTCCCTCAATCATCCCAAATGGTGTAGGGATCCACAGCAACGGTCATGTCAATGGTGCAGTTGGACCCTGGTTTAACCACTCTTGA 5028 0.4399 MKQASSEAVPSLSSAPSFTEAAATSSSSAAAAEDLAVGSRDGGGAQETVAVDRRGEYSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNVADDSKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDPKLGYLFNTDSVLITADILILNESVNFTRDNNELQNSSSSSSLSLTGSSGVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKTVVLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGTDSGFLVDDTAVFSTSFHVIKEFSSFSKNGAVIAGRSGSGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFAEHESELSSSGSPVDGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSCDGKKATKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPVADSVESCSKPSSDGSGAASPLECERENGTMESAQVPVNERLDSVVEESSNTSAVQSSDLNGKGIQGKALPGQPICPPETSATASENASFRSKTKWPQQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAKKIALVLDKAPKHLQADLVALVPKLVEQSEHPLAAYALLERLQKPDAEPALRIPVFGALSQLECGSEVWERILFQSFELLTDSNDEPLAATIDFIFKAASQCQHLPEAVRSVRVRLKNLGLEVSPCVLDFLSKTINSWGDVAETILRDIDCDDDYGDSCSALPCGIFLFGEHGTAPSGLHVIDEQAYQASRHFSDIYILFEMLSIPCLVAEASQTFERAVARGAISAQSVALVLQSRLSQRLNNNGGYVSENFQHSDGASEGDACEQLGVQRDEYTSVLGLAENLALSRDSCVKEFVKLLYMIMFRWFANESYRGRMLKRLVDRATSNTDNGREVDFDLDILVTLVCEEQDFIRPVLSMMREVAELANVDRAALWHQLCASEDEIIRVREESKTEISNMAKEKAIISQKLSESEATNNRLKSEMRAEMDRFSREKKELAEQVQEVESQLEWHRSERDDEIAKLSAEKKALHDRLHDAESQLSQLKSRKRDELKKVVKEKNALAERLKNAEAARKRFDEELKRFATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQIARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSLKELETLSRIHEDGLRQIHALQQRKGSPAGSPLVSPHALPHNHGLYPAASPPMAVGLPPSIIPNGVGIHSNGHVNGAVGPWFNHS 1675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01588 1675 Coils Coil 1515 1556 - -
Cca03g01588 1675 PANTHER TRAF-LIKE FAMILY PROTEIN 28 1675 - -
Cca03g01588 1675 SUPERFAMILY TRAF domain-like 399 540 - -
Cca03g01588 1675 SUPERFAMILY TRAF domain-like 228 373 - -
Cca03g01588 1675 MobiDBLite consensus disorder prediction 893 912 - -
Cca03g01588 1675 ProSiteProfiles MATH/TRAF domain profile. 564 688 IPR002083 GO:0005515
Cca03g01588 1675 SUPERFAMILY TRAF domain-like 57 196 - -
Cca03g01588 1675 MobiDBLite consensus disorder prediction 927 944 - -
Cca03g01588 1675 SUPERFAMILY TRAF domain-like 565 689 - -
Cca03g01588 1675 MobiDBLite consensus disorder prediction 850 944 - -
Cca03g01588 1675 CDD MATH 566 688 IPR002083 GO:0005515
Cca03g01588 1675 PANTHER TRAF-LIKE FAMILY PROTEIN 28 1675 - -
Cca03g01588 1675 Pfam MATH domain 430 536 IPR002083 GO:0005515
Cca03g01588 1675 Pfam MATH domain 577 684 IPR002083 GO:0005515
Cca03g01588 1675 Pfam MATH domain 67 190 IPR002083 GO:0005515
Cca03g01588 1675 CDD MATH 62 188 IPR002083 GO:0005515
Cca03g01588 1675 ProSiteProfiles MATH/TRAF domain profile. 398 534 IPR002083 GO:0005515
Cca03g01588 1675 CDD MATH 231 363 IPR002083 GO:0005515
Cca03g01588 1675 Gene3D - 1432 1625 - -
Cca03g01588 1675 CDD MATH 399 534 IPR002083 GO:0005515
Cca03g01588 1675 SMART math_3 403 515 IPR002083 GO:0005515
Cca03g01588 1675 SMART math_3 60 168 IPR002083 GO:0005515
Cca03g01588 1675 SMART math_3 235 348 IPR002083 GO:0005515
Cca03g01588 1675 SMART math_3 569 669 IPR002083 GO:0005515
Cca03g01588 1675 Coils Coil 1391 1436 - -
Cca03g01588 1675 Coils Coil 1441 1507 - -
Cca03g01588 1675 ProSiteProfiles MATH/TRAF domain profile. 230 367 IPR002083 GO:0005515
Cca03g01588 1675 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 390 543 IPR008974 GO:0005515
Cca03g01588 1675 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 557 690 IPR008974 GO:0005515
Cca03g01588 1675 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 226 373 IPR008974 GO:0005515
Cca03g01588 1675 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 44 195 IPR008974 GO:0005515
Cca03g01588 1675 ProSiteProfiles MATH/TRAF domain profile. 58 188 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01588 Cca-Chr3 34675009 34685909 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01588 - - ccaj:109798115 3244.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01588 03 34675009 34685909 Cca03g01588 03 34675009 34685909 ECH