Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01582 ATGCAGAGACGAAGTCCTCCCAAGCACAGGCACGATGGAACTTCGCCGCTGCCTCTCGGAATGGATTGGAGTCCTGCGCCTCGGAAATGGAATGGACGAGATACAGTGTGGCCACACAATCATCGTACCGGTTGGAGTTATTGTGTCACTATACCTTCTTGGGCCTTTGTTCCAAAATCAAGGAACTCAGATCCTATAGTGTTCTACAGGGTTCAAGTTGGTGTACAGTCACCGGATGGGATTACAAGGGTCCATGGAATATTAAGAAGGTTCAATGATTTTCTAAAGTTGTTTGCTGATCTTAAGAAGGAGTTTCCCAGGAAAAATATCCCTCCGGCGCCACCCAAGGGACTCTTGCGGTTGAAAAGCCGAGCTTTGTTAGAAGAGAGAAGGTACTCCTTGGAGGAGTGGATCACCAAACTATTGTCTGACATTGATGTATCAAGATGTGCTGCAGTGGCATCCTTTCTTGAACTAGAAGCAGCTGCTAGATCTTCATTCCAAGATGCAAGCCAGCAGAATTCTGAAACAGATCCTGATTCCAATAACACAGTTTATTCTGTGCAATCACCTCTCCAGTCGAGCTTATCATTAGTTGCTGGTAGTTCATCTGTTGCCTCAGATTATGGTAGTGATACTGCATATGAGCCATCTGACCTAGGGACACCAAGAGTTGGAAGGGACGATAATTCTGAAGTTGGCACAGATGATCTAACGTTGGATGAAGATTTGACGAATCCAATAGAAAAGCTCGTGAAATATGGCATAACAAATATTGATGAAGGTTTGTTTATGGGTCAGACTATTCTAGAGCAATTGGAAGGCCTTCCTAGGCATAGAACAAATGCCAGACATGTGAACTATGGTACAGAGAAGGACAAAAATAATGGTAATTTATATGATTCTTCACTTTTAGCTAATAATACCATGGAGCTTTTCTCTGAGCCTGGACATGCCAAGGTTGTTGGTCATGTTCGTAAGCTTTCAAATGAGAGTGTTGGGAGCGATGGAAGCTCAATACGAGGCAGTGACATGTCTAATTTTGGGATTCCAAATTCATCTGGTGATGGCTCTCATGACATTCCTGGATCTGCGTTGGTTTCAAGAGAGACAGATATTATGGGCCACACAAAGTCGAAGTGTACTGGTGATACTCAATTAGTCCTTCCACTAGATCAACGCAATAAATTGAACAGAATTCTTTCAACCATGCAGCGAAGGCTAGGCACCGCAAAAACTGATATGGAGGACCTTGTAGTTAGACTAAATCAAGAAATAGCTGCGAAGGATTTTCTTGCAACAAAGGTCAAGGATTTAGAAGTAGAACTTGAAACTACTAAACAGAAAAATAAGGAGAACTTGCAGCAGGCTATTCTAATCGAGAGGGAAAGATTTACCCAAATGCAGTGGGATATGGAAGAACTTAGACGAAAATCATTGGAAATGGAGATGAAACTAAAGTCTGAATCGGGGGGTAATTCCTATCAGAATTTGACAAAGGAATCAATTGTTCAGCAAAATGATGTACTGTTGCAGAATTTAGATGCTACAAAAGAGCAGCTGGAAATTTTGTCGAAACAGTATGGAGAGCTAGAAGCAAAATCCAAAGCAGATGTTAAAGTTCTGGTTAAGGAGGTCAAATCTCTCCGTAATTCCCAAACAACATTAAAGAAAGAACTTAGTGAGTCAATAAAGGAAAACACTGAAATTGAGAAACTACTACTTCAAGAAAGAGAGAAGAGGGAGCAGGCAGAAGCTGCTCGAAGAAAACTGCTAGAGAAATGCAGGCTTCTTTTCAACCAGCTTCAAGAGTGCAATGTCAATCTTCCTTGGGAATATGAAGATAGGACAGTCATGAATTCATCATCATTAACTGATGCTTTTAATCAATTAACAACATCTGATGACCAAATGGACATCCTACTAGCAGAGGTACAAAACTTAGAGAAGGACTACGGAAGTGAGGCTTCCAATGTAGATAAAACCAATGACATAAAAGATGGTGTAATATGTGATGATGAAGTGAGAAAGATGATAGCAGATTTGTTCACAGATAATGTTAGATTGAGAAAACAGACAAACCACGTCACAAGGCATGCTCTCAAATTGGACATGACAGCAAGTGAAGATTCCCCTTCAATGGAAACTGTAACAAGTATTTAG 2163 0.4101 MQRRSPPKHRHDGTSPLPLGMDWSPAPRKWNGRDTVWPHNHRTGWSYCVTIPSWAFVPKSRNSDPIVFYRVQVGVQSPDGITRVHGILRRFNDFLKLFADLKKEFPRKNIPPAPPKGLLRLKSRALLEERRYSLEEWITKLLSDIDVSRCAAVASFLELEAAARSSFQDASQQNSETDPDSNNTVYSVQSPLQSSLSLVAGSSSVASDYGSDTAYEPSDLGTPRVGRDDNSEVGTDDLTLDEDLTNPIEKLVKYGITNIDEGLFMGQTILEQLEGLPRHRTNARHVNYGTEKDKNNGNLYDSSLLANNTMELFSEPGHAKVVGHVRKLSNESVGSDGSSIRGSDMSNFGIPNSSGDGSHDIPGSALVSRETDIMGHTKSKCTGDTQLVLPLDQRNKLNRILSTMQRRLGTAKTDMEDLVVRLNQEIAAKDFLATKVKDLEVELETTKQKNKENLQQAILIERERFTQMQWDMEELRRKSLEMEMKLKSESGGNSYQNLTKESIVQQNDVLLQNLDATKEQLEILSKQYGELEAKSKADVKVLVKEVKSLRNSQTTLKKELSESIKENTEIEKLLLQEREKREQAEAARRKLLEKCRLLFNQLQECNVNLPWEYEDRTVMNSSSLTDAFNQLTTSDDQMDILLAEVQNLEKDYGSEASNVDKTNDIKDGVICDDEVRKMIADLFTDNVRLRKQTNHVTRHALKLDMTASEDSPSMETVTSI 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01582 720 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 1 714 IPR044588 GO:0015031
Cca03g01582 720 MobiDBLite consensus disorder prediction 207 239 - -
Cca03g01582 720 ProSiteProfiles PX domain profile. 47 164 IPR001683 GO:0035091
Cca03g01582 720 MobiDBLite consensus disorder prediction 168 187 - -
Cca03g01582 720 Coils Coil 429 456 - -
Cca03g01582 720 SUPERFAMILY PX domain 40 160 IPR036871 GO:0035091
Cca03g01582 720 SMART PX_2 55 160 IPR001683 GO:0035091
Cca03g01582 720 Coils Coil 500 534 - -
Cca03g01582 720 PANTHER PX DOMAIN-CONTAINING PROTEIN EREL1-RELATED 1 714 - -
Cca03g01582 720 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g01582 720 Coils Coil 631 651 - -
Cca03g01582 720 Coils Coil 565 601 - -
Cca03g01582 720 Pfam PX domain 87 158 IPR001683 GO:0035091
Cca03g01582 720 Gene3D - 46 186 IPR036871 GO:0035091
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01582 Cca-Chr3 34576849 34585557 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01582 - - gmx:100792151 1272.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01582 03 34576849 34585557 Cca03g01582 03 34576849 34585557 ECH