Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01564 ATGGACTTAGAAGGTAGTGTAAAGGATTCAGTGGTTACTCAGATTAGCATCGGTGGATTTGATAGTGAGATCAAAGCTAGTGATCTTGTGAAGTACTTGGAGACTAAAATTGGAATGGTAGACAGGTGTCGATTGAAGACTTCTTGTACCCCTCCGGAGTCTTATCCGGAATTTAATATAATTGATACTGCACAGATTAAAAAATCGGATGACTATAAGAAGGTGGAGCCTCACGCCTTTGTGCATTTTGCATCTCATGCATCTGTGACTGCATCCCTGAATGCTTCAGGTTGTTGTGATCTATTTTTGAATAATAAACCCTTGAAGGTTAGCTGTGGGCCCGAAAATCCATACTTCCTGAACCAAAGGAGGAGAACTACAATTCCTTTTAAGATGTCTGATGTACTTGTTGAAATTGGGACTTTGGTTAGCCCAGGGGAATTTTTTGTTGCTTGGAGAGGACCTGATAAAGGAGTAAAATTTCTAGTGGATCCATTTGATGGCATGTGCAGGCTTTGTTTCAGTAGAGATACTGCATTCTTATTCAAAGGAGTAGAAAAAAAAGTAGTGATAAAGTGTGATTTTCAGGTGGGGTTCCTGGTTAGAGACATTAATGAGATTAGGAGATACAATGATACATCGTATCTTGTTGTTTTATTACACCTAGCTTCTTCACCTCTGGTTTGGTACAGAACTGCCGATGATGACATTGTAGAGTTAGTACCATTTGATTTGCTGGATGATGATGATCCTTGGATTAGGACCACTGATTTTACACCTAGCGGGGCCATTGGTCGATGCTCTTTTTATAAAATTTCAATCCCGCCTCGTCATGGTGCAAAACTGATGAAGGCCATGCTTTATCTGAAAGGTCAACGAGTGCAAGTGCAAGATCTTCCACTTAAACAGACACTTAGGACAGTGAATGAACCTAATTTTGGGGTGCCCATGTCAGATGCGTTCTTCTACATAGAATTTCAGGAGGGCATTCCTTTTGACATAATGTTTTTAGTCAATGCTATTGTACATAAAGGCATATTCAATCAGCACAGGTTGTTGGATAGGTTTTTTGAGTTGCTGAGAAATCAACCAAGGGAGCTCAATGTGGCTGCCCTAAAGCATTTATGTTCTTACAAGCGTCCAGTATTTGATGCAACTAAGAGGTTAAAAACAGTCCAAGAATGGTTGCTCAGAAATCCAAAACTTTATCAGAGCTCTAAACAGTTGGATGATATTGTTGAGGTTAGAAGATTGGTTATTACTCCTTCAAAAGCTTATTGTATACCCCCAGAAGTTGAATTGTCCAACAGGGTTCTGAGAAAATTCAAAGAAGTTTCAGATTGTTTCTTGAGAGTTGCCTTTATGGATGAAGGCATGCAGACAATGAATATGAATGCTCTTAACTATTATGTTGCTCCTATAGTGAAGGAAATCACATCAAACTCTTTTCCACAGAAGACAAAAATATATAAAAGGGTGAAGACTATCTTGGAAGAGGGATTTCACTTTTGTGGCCGAAAATATTCATTTTTAGCCTTTTCATCCAATCAACTTAGGGATCGTTCTGCTTGGTTTTTTGCCGAAGACAAGAACATAAGATGTGATGATATACGAAATTGGATGGGCAAGTTTAATCAGAGGAATGTTGCAAAATGTGCTGCTAGGATGGGACAATGCTTCTCATCTACTTATGCAACTGTTGAAGTTGGTGCTGTTGAAGTTAACTCTATGTTACCTGACGTTGAGAGGAATAATTATGTTTTCTCTGATGGTATTGGTATTATCACTCCTGATCTAGCCAGGGAAGTTGCAGAAAAATTGAAATTGGACAATGTACCCTCTGCTTACCAGATCAGATATGCCGGTTGTAAAGGGGTTGTAGCCTCTTGGCCTGCTAAAGGGGATGGTGTCAAGCTTTCTTTGAGGCCTAGTATGAACAAGTTTCAATCTACTCATACTATCTTAGAGATCTGTGCTTGGACCAGGTTTCAGCCCGGTTTTCTTAACAGGCAGATTATAACATTGCTTTCAGCATTAGAAGTGCCCGATGACATATTTTGGCAAATGCAGGAAGCAATGCTTTTGAAGTTAAATCAAATGCTTGTGGATGCAGATATCGCTTTTGATGTTCTCACCAAATCATGTGCTGACCATGGAAATGCTGCAGCAATAATGTTAAGTTGTGGCTTCAGTCCCCAAACAGAACCTCATCTTAGAGGTATGTTAATTTCTACACGTGCTGCACAGCTTTGGGGACTTAGAGAAAAGTCCAGGATTTTTGTATCATCTGGGCGATGGTTGATGGGTGTCTTAGATGAGTTTGGCGTGCTTGAACAAGGGCAGTGCTTTGTTCAAGTGTCAACTCCTTCTCTTGAAAATTGTTTCTCAAAGCATGGTTCAAGGTTTTTAGAGACAAAGAACCTGCATGTAGTTAAAGGTTTTGTGGTTATAGCCAAAAATCCTTGTCTTCATCCGGGAGATGTAAGAATTTTGGAGGCAGTTGATGCCCCCAATTTACATCATTTATATGACTGTCTTGTTTTCCCTCAAAAGGGTGACAGACCCCATACAAATGAAGCTTCTGGAAGTGACCTTGACGGGGATCTATATTTTGTCACATGGGATGAAAATCTTATACCACCAAGTAAGAGGAGCTGGATACCTATGGAGTACGCCCCTCAAGAAAGCAAACTTCAAACTCGTCAAGTCACTACCCGGGACATCATAGAATTTTTTGTCAGAAACATGGTAAATGAAAATTTGGGTGCAATCTGCAATGCACATGTGGTACATGCTGATTCCAGTGACTATGGTGCCTTGGATGAGAAATGCATACTCTTGGCTGAGCTAGCGGCCACTGCTGTTGATTTTCCAAAGACCGGTAAGCTTGTTACCATGCCTTTTCATCTGAAACCAAAACTGTACCCTGATTTCATGGGGAAAGAGCAGCATCAATCTTACAAGTCAAAGAAAATACTGGGTAAACTTTACCGGCGTATCAAAGATGCTTATGATAAAGATATTGATGCAGCCGATTTGAACTTTGTGACTGGTGATATACCATATGATAAAGATCTCGAGATTCCAGGATCTGCTGATTTTATTGCTGATGCATGGGATAAAAAATGTTCGTATGATGGCCAGTTAAGTGGGCTACTTGGTCAATATAAAGTAAAAAGAGAAGAAGAAGTAGTTACTGGACAGATCTGGTCCATGCCAAAATACAATAGTAGGAAACAAGGGGAGCTTAAGGAGAGGCTGAAGCACTCATACAGTGCCCTGAAAAAAGAATTTAGGTACGCATTTGAGAAATTGAATTCAGATGTTGGAGAATTAAGTGAGGATGAAAAACATTTGTTGTATGAACAGAAAGCTTCGGCCTGGTATCAGGTGACATATCATCCCAAATGGGTGAAAAAATCCCTTGATCTGCAAGATAACTCCCCAGAAAACCAAGGGGCTAATGGTTTGGGAAGTATGGTGATGTTGAGTTTTCCTTGGATTGCAGTTGATTACCTAGCTCGCACAAAGATAAGGCATCAGCGTCAGAGATGTGGGAATTTTGATTCAACTAAGCCAGTTGATTTACTGGCAAAGTTTCTGTCTGAAAGGTTATAA 3618 0.4005 MDLEGSVKDSVVTQISIGGFDSEIKASDLVKYLETKIGMVDRCRLKTSCTPPESYPEFNIIDTAQIKKSDDYKKVEPHAFVHFASHASVTASLNASGCCDLFLNNKPLKVSCGPENPYFLNQRRRTTIPFKMSDVLVEIGTLVSPGEFFVAWRGPDKGVKFLVDPFDGMCRLCFSRDTAFLFKGVEKKVVIKCDFQVGFLVRDINEIRRYNDTSYLVVLLHLASSPLVWYRTADDDIVELVPFDLLDDDDPWIRTTDFTPSGAIGRCSFYKISIPPRHGAKLMKAMLYLKGQRVQVQDLPLKQTLRTVNEPNFGVPMSDAFFYIEFQEGIPFDIMFLVNAIVHKGIFNQHRLLDRFFELLRNQPRELNVAALKHLCSYKRPVFDATKRLKTVQEWLLRNPKLYQSSKQLDDIVEVRRLVITPSKAYCIPPEVELSNRVLRKFKEVSDCFLRVAFMDEGMQTMNMNALNYYVAPIVKEITSNSFPQKTKIYKRVKTILEEGFHFCGRKYSFLAFSSNQLRDRSAWFFAEDKNIRCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYATVEVGAVEVNSMLPDVERNNYVFSDGIGIITPDLAREVAEKLKLDNVPSAYQIRYAGCKGVVASWPAKGDGVKLSLRPSMNKFQSTHTILEICAWTRFQPGFLNRQIITLLSALEVPDDIFWQMQEAMLLKLNQMLVDADIAFDVLTKSCADHGNAAAIMLSCGFSPQTEPHLRGMLISTRAAQLWGLREKSRIFVSSGRWLMGVLDEFGVLEQGQCFVQVSTPSLENCFSKHGSRFLETKNLHVVKGFVVIAKNPCLHPGDVRILEAVDAPNLHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKLQTRQVTTRDIIEFFVRNMVNENLGAICNAHVVHADSSDYGALDEKCILLAELAATAVDFPKTGKLVTMPFHLKPKLYPDFMGKEQHQSYKSKKILGKLYRRIKDAYDKDIDAADLNFVTGDIPYDKDLEIPGSADFIADAWDKKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRYAFEKLNSDVGELSEDEKHLLYEQKASAWYQVTYHPKWVKKSLDLQDNSPENQGANGLGSMVMLSFPWIAVDYLARTKIRHQRQRCGNFDSTKPVDLLAKFLSERL 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01564 1205 CDD RRM_SF 15 111 - -
Cca03g01564 1205 PANTHER RNA-DEPENDENT RNA POLYMERASE 7 1204 IPR007855 GO:0003968
Cca03g01564 1205 Pfam RNA dependent RNA polymerase 420 1000 IPR007855 GO:0003968
Cca03g01564 1205 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 7 1204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01564 Cca-Chr3 34365630 34371733 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01564 K11699 - gmx:100795178 2235.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01564 03 34365630 34371733 Cca03g01564 03 34365630 34371733 ECH