Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01559 ATGATCATGAGGCTCTTTCTCTTTGTAGTATTTTCAAGCCTATTGCTGCAACAAGTGAGCCTAGTTCTTGGAGACGTTGGTACAGCTGCTTCTTATGGACCCCCATACATACCTACTGCTTGCGATGGAAATAGGGCAGGGCAGTTTCCTCCGGGAAACCTATTCGTGGCTGTGAATGATGCGTTGTGGGACAACGGGGCAGCCTGTGGAAGACGGTACAGAATAAGGTGCATAAGTGGAAACAATAGGCCATGCAAAGGTGGTAGCATCGATGTTAAAGTCGTAGATTCGTGTCCTAAGTCACCATGTCCCAACACTCTCCTCATGTCAAATGATGCCTTCGCAGCTATTTCACACTTCCCTCATGCAAAAATCAATGTTGAATATACTCAGATATGA 399 0.4586 MIMRLFLFVVFSSLLLQQVSLVLGDVGTAASYGPPYIPTACDGNRAGQFPPGNLFVAVNDALWDNGAACGRRYRIRCISGNNRPCKGGSIDVKVVDSCPKSPCPNTLLMSNDAFAAISHFPHAKINVEYTQI 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01559 132 PANTHER RLPA-LIKE PROTEIN, DOUBLE-PSI BETA-BARREL-RELATED 3 131 - -
Cca03g01559 132 Pfam Lytic transglycolase 57 129 IPR009009 -
Cca03g01559 132 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 3 131 - -
Cca03g01559 132 SUPERFAMILY Barwin-like endoglucanases 23 132 IPR036908 -
Cca03g01559 132 SMART dpbb_1 56 129 IPR007112 -
Cca03g01559 132 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 27 132 IPR007112 -
Cca03g01559 132 Gene3D - 25 132 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01559 Cca-Chr3 34315761 34316623 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01559 - - gmx:100792215 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01559 03 34315761 34316623 Cca03g01559 03 34315761 34316623 ECH