Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01554 ATGCTGGAAGGGGCAGAGGCACCTGAAACCGACGAGTGTTGCATCTACAAAGTACCCTTTGATATTCGGAAACTCAACGAAGATGCCTACACCCCAAGGGTGGTTTCTATTGGTCCTTTTCACCACAAGGGTCATCCTCGCCTTCTTAACATGGAAAGGCACAAACGTATTTATTGCAAGGCATTTCTCAAACGAACACAAACATCCTTGGACACCTGGATCCGCCACATAGAAGGGGAGGAGTCCAAATTCCGTGGCTGTTATTCAGACTCCCTTGAGTTCACCAAGGAGGAACTGGTGAAAATCATCTTTGTCGATTCTGGTTTTATATTTGAACTTTTTTGGAGTACCTATTATGATGAGTGGTCAGGGAATGACTCCTTTCTTTTGAAGCCTTGGTTGACCACTAATATAAGATTAGATCTGTTGTTACTTGAGAATCAGCTTCCTTATTTTATGCTTGAAGATCTCTTTAATCTGTCCTACCCCTCTAGATCTGCCTCTAGTAACAATAAAATCCCTTCATTTATTGAGCTTACTTTTGACTATTTTGCCTATTACAACAGATCCAATTTGCTTTTTCATAATGTTAGCATAAGGCACTTCACGGATCTCATAAGAACTTTCCACTTACAACATCCTAAGCAAAGGCGATCCCTTAGGACTGATGAATCGGTCATACATCTTCATAGTGCTACTGAGCTGCTAGAAGCAGGAGTGAGGTTTAAGGACAATAAAAGAAGTAACTGCTTGCTGGACTTGAAATTTTCAGGAGGGGTTCTTGAAATCCCACAGTTGAAAGTGGAAGATTGGACTGAACTATTGTTCCGCAACTTGGTGGCGTTGGAGCAGTGTCACTACCCTTACGAATCCTACATTACAGACTACGTTGCTATTTTGGACTTCCTTGTGAACACAGGGAGAGATGTGGATATACTGGTTCAAAAGAGAGTTCTGGTGAACTGGCTTGGAGATAGTGATTCTGTGGCTGATTTGTTTAATGGTCTTTGGAAAAATATTACACATTTAAATTTCAATGACAGTTACTTTCGTATGTGCCAAGATATGAATGCTTTTTATAGAGATCCTTGGCATAAAATGAAGTCTACTTTGAGAAGGGATTATTGTAGCAGTCCTTGGCAAACTGCTGCTACCATTGCTGGAATTGTTCTCCTTATTCTCTCTTTAGTTCAAACAGTTTGTTCTATCTTACAAGAATCGTTTAAGATGACTAGAACTGTGAAGCGCGATGATGATGTTATGATCGATATTAAGGCGATGCTGGATGGGGCAGAGGTACCCGTAACCAATGAGTGTTGCATCTACAAAGTACCCTTTCATATTCGGAGACTCAAAGCAGATGCGTACACCCCAAATGTTGTTTCTATAGGCCCTTTTCACCACAATAGCCATCCTCGCCTCCTTAACATGGAAAGACACAAACTCGGTTATTGTAAGGCCTTTCTTCAACGAACCAACACAACTTGGCATAGTTGGATCTGCTACATAAAAGAAGAGGTGGAGCCCCATTTTCATCGTTTTTATTTAGACACCCTTGATGAGTTCAGCAAAGAGGAACTGATAAAGATCATCTTTGTTGACTCTGGTTTTATACTTGAGCTCTTTTGTAGATACCATAGTAAAAATTGGTCAAAGGATGACGTGTGTCTTTCAAAATCTTGGTTGGAATCTATCATAAGATTAGATTTGTTGTTACTTGAGAACCAACTTCCTTTTTCTCTTCTTGAGTCTCTCTTTAATAAGTTTTTCACCAACAGATCTAATCATAACATCCCTTCATTTATTGTGCTTACGTTTGACTATTTTGATTATTTTAATAAATCCAACTTAAGTTATGATAATACTGGCATAGAGCACTTTACAGATCTCATAAGAACTTTTCACTTGCAACATCCTCCTCAAAAACGACCATCTAGGACTAATGAAGAGATAGTGACACACCTTCCTAGTGCTACTGAGTTGTCAGAAGCAGGAGTGAGGATTAAAGTAAATAAGGAAAGCGAGTGCTTGCTGAACTGGACATTTTCAGGACGGGTTCTCAGAATTCCGGAATTGGTAGTGGAAGATTGGACTGAAATTTTGTTCAGGAATATGGTGGCTTTCGAGCAGTGTCACTATCCTGATAAATCTTATATTACAGACTATGTTGCTGTTATGGACTTCCTTATAAACACAAGCAGAGATGTGGATATACTAGTTCGGAAGGGAGTATTGGTTAACTGGCTAGGAGATGCTGATTCTGTGGCTGACCTCTTTAATGGTCTCATGAAAAATATTGTGCAGACAAATGACAGTTCTGAATACTTTCGTATCTGCAAAGAGTTGAGTGCTTTTCAGAGAAATCCTTGGCATAATTTGAAGTCCACTCTGAGACGTGATTATTGTAAAAGTCCTTGGCAAACTGCTGCTACCATAGCTGGTATTCTTCTCCTTATTCTCTCGCTGATTCAATCAGTTTGTTCTGTCTTGCAAGTAATACAGCAATATAATGCCCCCTCAAAGACCTGGTAA 2532 0.3973 MLEGAEAPETDECCIYKVPFDIRKLNEDAYTPRVVSIGPFHHKGHPRLLNMERHKRIYCKAFLKRTQTSLDTWIRHIEGEESKFRGCYSDSLEFTKEELVKIIFVDSGFIFELFWSTYYDEWSGNDSFLLKPWLTTNIRLDLLLLENQLPYFMLEDLFNLSYPSRSASSNNKIPSFIELTFDYFAYYNRSNLLFHNVSIRHFTDLIRTFHLQHPKQRRSLRTDESVIHLHSATELLEAGVRFKDNKRSNCLLDLKFSGGVLEIPQLKVEDWTELLFRNLVALEQCHYPYESYITDYVAILDFLVNTGRDVDILVQKRVLVNWLGDSDSVADLFNGLWKNITHLNFNDSYFRMCQDMNAFYRDPWHKMKSTLRRDYCSSPWQTAATIAGIVLLILSLVQTVCSILQESFKMTRTVKRDDDVMIDIKAMLDGAEVPVTNECCIYKVPFHIRRLKADAYTPNVVSIGPFHHNSHPRLLNMERHKLGYCKAFLQRTNTTWHSWICYIKEEVEPHFHRFYLDTLDEFSKEELIKIIFVDSGFILELFCRYHSKNWSKDDVCLSKSWLESIIRLDLLLLENQLPFSLLESLFNKFFTNRSNHNIPSFIVLTFDYFDYFNKSNLSYDNTGIEHFTDLIRTFHLQHPPQKRPSRTNEEIVTHLPSATELSEAGVRIKVNKESECLLNWTFSGRVLRIPELVVEDWTEILFRNMVAFEQCHYPDKSYITDYVAVMDFLINTSRDVDILVRKGVLVNWLGDADSVADLFNGLMKNIVQTNDSSEYFRICKELSAFQRNPWHNLKSTLRRDYCKSPWQTAATIAGILLLILSLIQSVCSVLQVIQQYNAPSKTW 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01554 843 PANTHER UPF0481 PLANT-LIKE PROTEIN 1 405 - -
Cca03g01554 843 PANTHER UPF0481 PLANT-LIKE PROTEIN 418 837 - -
Cca03g01554 843 PANTHER PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED 1 405 IPR004158 -
Cca03g01554 843 PANTHER PROTEIN, PUTATIVE (DUF247)-RELATED-RELATED 418 837 IPR004158 -
Cca03g01554 843 Pfam Plant protein of unknown function 441 820 IPR004158 -
Cca03g01554 843 Pfam Plant protein of unknown function 15 394 IPR004158 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01554 Cca-Chr3 34254628 34263042 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01554 - - gmx:100785283 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01554 03 34254628 34263042 Cca03g01554 03 34254628 34263042 ECH