Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01550 ATGAGCTACGGCAGCTCCTCAACGAGTTCTGGTGGTGGGACTTCTAGAAGGACATTTGAGTTTGGAAGGACCCATGTGGTCAGACCTAAAGGGAAACACCAGGCAACTATAGTTTGGCTACATGGCCTTGGTGATAATGGTTCAAGCTGGTCCCAACTTCTGGAAACTCTTCCTCTTCCAAATATTAAATGGATTTGCCCAACTGCTCCTACACGGCCTGTAGCCATATTTGGTGGATTTCCTTGCACTGCTTGGTTTGATGTTGGAGAGATTTCAGAAGATGCTCCTAATGATTTAGAGGGTTTAGATGCTTCTGCAGCACATGTTGCCAATCTTTTGTCAACAGAGCCTCCAAATATCAAACTTGGTATTGGGGGCTTCAGTATGGGTGCTGCAACTGCACTGTATTCAGCTACGTGCCATGTTTTGGGGCACTATGGGAATGGAAACATTTACCCTATCAACTTAAGTGCAATTGTTTCTTTAAGTGGCTGGCTTCCTTGTTCAAGGACCTTGAAAAACCAAATTGAACGATCACGTGATGGCATAAGGCGTGCAGCATCATTGCCCTTATTTCTCTGCCATGGAAAAGGTGATGATGTGGTTGCATATGAACATGGAGAGAGGTCTGCAGTGGCCTTAAGTTCTGCAGGATTCCCGAATCTTATATTTAGGAGTTACAATGGGTTGGGTCACTATACAATCCCTGAAGAGACTGATGAAGTTTGCAGGTGGCTAACTGCAAATTTGGGACTGGAGGGGTTTCGGTTGAACTGA 777 0.4517 MSYGSSSTSSGGGTSRRTFEFGRTHVVRPKGKHQATIVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTRPVAIFGGFPCTAWFDVGEISEDAPNDLEGLDASAAHVANLLSTEPPNIKLGIGGFSMGAATALYSATCHVLGHYGNGNIYPINLSAIVSLSGWLPCSRTLKNQIERSRDGIRRAASLPLFLCHGKGDDVVAYEHGERSAVALSSAGFPNLIFRSYNGLGHYTIPEETDEVCRWLTANLGLEGFRLN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01550 258 Gene3D alpha/beta hydrolase 14 251 IPR029058 -
Cca03g01550 258 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 254 - -
Cca03g01550 258 MobiDBLite consensus disorder prediction 1 22 - -
Cca03g01550 258 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 254 - -
Cca03g01550 258 MobiDBLite consensus disorder prediction 1 17 - -
Cca03g01550 258 Pfam Phospholipase/Carboxylesterase 25 246 IPR003140 GO:0016787
Cca03g01550 258 SUPERFAMILY alpha/beta-Hydrolases 25 249 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01550 Cca-Chr3 34214795 34220101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01550 1 254 Acyl Lipid Metabolism Gene Families AT5G20060 68.110 1.64e-130 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01550 K06130 - gmx:100811642 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01550 03 34214795 34220101 Cca03g01550 03 34214795 34220101 ECH