Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01547 ATGAGATTGAGAAAGGGAAATAAAGTGGAGATCCGTGGCAATACTGAACAGCTTAGTGTGGAATGGCGTAGTGCTCGAATAATTTCTGGTAATGGGCACAGCTACAGTGTCCAGTATGACCGTTCTAGCACAACAAGCGAGGCTAGCATAGAGAGAGTTTCAAGGAAGGCCATCAGACCATGCCCCCCTCTTATTAAAGGTATTGAGAGTTGGGCAGCTAATGATCATGTGGAAGTTTGTGATGCTGGTTCTTGGAAAGCGGCTACTGTTTTGAAAGTCATTGGTGGAGGCTTATACTTGGTAAAGCTGTGGGTAACTTGCAACGAGTTAAAGGTTCACAAAGTAAACATGAGGGCACGCCAATCTTGGCTAAATGGTCAATGGATTGTCATGCCAAAGGGATCAGACATGTTTGGAGTTGGGAAGTCTAGCAAGTATTTGAATTCAAAGAGTTACAAGGATCAACCTGAAAATCAGCGAACCAGAAATATTTTTTCTCCAGTATTAGATGTCAGTGGTCATCAGGAGCCTCATCTGTCCTCATCTTCAACATTGAAGAGATTGTCCCCTTATGGCTCCTCTCTTATTGAGGCTTATCCCAGAAAAGTAAGGGCTGTTGAAAATATGGGTGAGTGTGGAAGATTCAAAGCTGTAACCACAGCCTCCTTCCTGCAAAAGGTAGATGCTGTTGCTTACCCGCAAAATATTATGGGTGAAAAATGCATGCATACATCCTTTACTAATGGTACCAACCAATATTATGAAACAGGAAAGGAGAATCCTTATATTGTTTCAACACATTTTCTTGAAAGAATTGAAGAACCTGATTATTCTTGTAGTGATAGTTCAGTTGGCAGTTGTAGTGTGAAAAGTAGTAATTCAAATAAATTTTCCAGTGATACCTTATCAGGTCCTTGCCAAGATGAAGATATCTTTTGCAGTGATGCAGAATCTCTAGATGTTGGAGATGTGGATAAAGGATGCTCCATTTCTCCCGAAGAGGTTGTAGCAGATAGAATTCATAGGTTAGAGTTGCATGCCTATCACAGTACCCTAGAAGTTATGTATGCTTCTGGTCCTCTAAGTTGGGAACAAGAAGAATTATTGACTAACCTTCGTATTTCACTCAATATTTCAAATGATGAACATTTGATGGAGATAAAGAACTTAGTTTCAGGTGGTCAGCATTTTTAA 1194 0.4028 MRLRKGNKVEIRGNTEQLSVEWRSARIISGNGHSYSVQYDRSSTTSEASIERVSRKAIRPCPPLIKGIESWAANDHVEVCDAGSWKAATVLKVIGGGLYLVKLWVTCNELKVHKVNMRARQSWLNGQWIVMPKGSDMFGVGKSSKYLNSKSYKDQPENQRTRNIFSPVLDVSGHQEPHLSSSSTLKRLSPYGSSLIEAYPRKVRAVENMGECGRFKAVTTASFLQKVDAVAYPQNIMGEKCMHTSFTNGTNQYYETGKENPYIVSTHFLERIEEPDYSCSDSSVGSCSVKSSNSNKFSSDTLSGPCQDEDIFCSDAESLDVGDVDKGCSISPEEVVADRIHRLELHAYHSTLEVMYASGPLSWEQEELLTNLRISLNISNDEHLMEIKNLVSGGQHF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01547 397 SMART ENT_2 336 395 IPR005491 -
Cca03g01547 397 ProSiteProfiles EMSY N-terminal (ENT) domain profile. 336 397 IPR005491 -
Cca03g01547 397 Gene3D ENT domain 330 395 IPR036142 -
Cca03g01547 397 SMART agenet_At_2 69 125 IPR014002 -
Cca03g01547 397 SMART agenet_At_2 1 66 IPR014002 -
Cca03g01547 397 PANTHER PLANT TUDOR-LIKE RNA-BINDING PROTEIN-RELATED 1 264 - -
Cca03g01547 397 SUPERFAMILY ENT-like 339 393 IPR036142 -
Cca03g01547 397 Pfam ENT domain 339 391 IPR005491 -
Cca03g01547 397 Pfam Agenet domain 6 63 IPR008395 -
Cca03g01547 397 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 1 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01547 Cca-Chr3 34178504 34183182 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01547 - - gmx:100812171 594.734