Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01535 ATGGCTACTACATACCCATTCGGAGTCTCTCTTCACTCCCAGGCTCGCAGAGTGGACAACTCAACTTCCATCTTCCCCCTCCACGTGGACCTCTCCACTATTTCTATGTGCCCTCGTTCTGCTTCCAAGGGTTTAATTGATCGAGTATATGCACGACTAGATAGTGATGATTACTACCGGGAAAAAGATCCTACACCCATTCTTGACATGGTTGAAAGCCCTCTTTGCTTGAAAAACTTATCTATAAAGGAACTGAAACAACTTGTAGTTGAAATCCGTTCAGATTTGTCTTTTATTGTGTCAGGTACACAAATATCACCGAAAGCAAGTATGGCAGTGGTGGAGCTGACAGTTGCATTACATCATGTTTTTCATGCTCCGGTAGACAAGATATTGTGGGATGTTGGGGATCAAACATATGCACATAAGATTCTTACAGGAAGGCGAGCACTCATGAAGACAATGAGAAGAAAAAATGGCCTTTCTGGTTTTACTTCTAGATTTGAGAGTGAATATGATGCATTTGGTGCAGGTCATGGATGCAACAGTATTTCTGCTGGACTTGGCATGGCAGTTGCACGGGATATTAAGGGTAGGCGAGAACGCATAGTTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGTGTACGAGGCAATGAGCAATGCAGGATATTTGGACTCAAACATGGTTGTGATTTTGAATGATAGCCGCCACTCTTTACTTCCAAAAATTGAGGAGGGCCCAAAGACATCTGTCAATGTCTTATCTAGTACCCTAAGCAAGCTCCAGTCCAGTCAATCTTTCCGAAGATTTAGAGAAGCTGCAAAGGGTGTTACAAAACGAATTGGTAGAGGTATGCATGAGTTGGCTGCTAAAGTTGATGAATATGCTCGTGGTATGATGGGTCCTCTAGGTTCTACTCTTTTTGAAGAGCTTGGATTGTACTACATAGGCCCAGTGGATGGACATAACATTGAAGATCTAATATGTGTTCTGCAAGAAGTAGCTTCCCTGGATTCAATGGGACCTGTCTTGGTACATGTAACAACTGATGAAAATCAGGGAGATGAAAACAGTTGGAAAAGTGATATAACAGACAGGCAGCAGGACGATGATTCTGTTAAATTTGATTCATTAGATAATGTTGTTCCGCCTCAAACATTTGGCGATTGCTTTGTGGAGACTCTGGTTGCCGAAGCAGAGAAAGACAAAGATATTGTCGTTGTTCATGCAGGAATAACGATGGAGCCATCGCTTGAACTGTTTCGGGAAAATTTTCCAGAAAGGTTTTTTGATGTGGGAATGGCTGAGCAACATGCAGTCACATTTGCCTCTGGTTTGGCATGTGGTGGTTTGAAGCCATTTTGCATTATACCTTCTTCCTTTCTACAAAGAGCCTATGACCAGGTGGTGCATGATGTTGATCAACAGAGAATTCCAGTGCGATTTGTCATCACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTCCAATGTGGAGCATTTGATATAACATTTATGTCATGCTTGCCAAACATGATTGTCATGGCACCAGCTGATGAGGTTGAACTCATGCACATGGTGGCTACTGCTACTCGTATCAACAATCAGCCCATCTGCTTTCGATATCCAAGGGGTGCCCTGGTTGGGAAAGGCCACGCTATAGGCGGTGGAATCCCCCTCAAGGGAATTAGCGGAAGAGGAAGAGTTCTTGTTGAAGGTAAAGATGTTGCTTTCCTAGGATATGGATCGATGGTTCAGAACTGCCTAAAGGCTCATTCACTCCTTGCAAAGCTAGGCATTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATCAAGCTTCTGAGGCAGCTTTGTAAAAATCACTCTTTTCTAATAACTGTTGAAGAAGGATCCATTGGAGGTTTTGGTTCCCATGTTGCTCAGTTTATTGCACTAAATGGACTGCTTGATGGAAGAATAAAGTGGCGACCAATTGTGTTACCAGACAGATATATTGAGCATGCATCACCAAATGAACAGCTTGAGCAAGCAGGGTTGAGTGGACATCACATTGCTGCCACAGCATTGAGTTTGCTAGGCCGTACCCGTGAAGCTCTCCTATTTATGTGTTCCTGA 2136 0.4373 MATTYPFGVSLHSQARRVDNSTSIFPLHVDLSTISMCPRSASKGLIDRVYARLDSDDYYREKDPTPILDMVESPLCLKNLSIKELKQLVVEIRSDLSFIVSGTQISPKASMAVVELTVALHHVFHAPVDKILWDVGDQTYAHKILTGRRALMKTMRRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRRERIVAVISNWTTMAGQVYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGPKTSVNVLSSTLSKLQSSQSFRRFREAAKGVTKRIGRGMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVLVHVTTDENQGDENSWKSDITDRQQDDDSVKFDSLDNVVPPQTFGDCFVETLVAEAEKDKDIVVVHAGITMEPSLELFRENFPERFFDVGMAEQHAVTFASGLACGGLKPFCIIPSSFLQRAYDQVVHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPADEVELMHMVATATRINNQPICFRYPRGALVGKGHAIGGGIPLKGISGRGRVLVEGKDVAFLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKNHSFLITVEEGSIGGFGSHVAQFIALNGLLDGRIKWRPIVLPDRYIEHASPNEQLEQAGLSGHHIAATALSLLGRTREALLFMCS 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01535 711 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 10 710 - -
Cca03g01535 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 388 550 IPR029061 -
Cca03g01535 711 Pfam Transketolase, pyrimidine binding domain 392 550 IPR005475 -
Cca03g01535 711 SUPERFAMILY TK C-terminal domain-like 568 699 IPR009014 GO:0003824
Cca03g01535 711 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 68 352 IPR005477 GO:0008661|GO:0016114
Cca03g01535 711 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 67 700 IPR005477 GO:0008661|GO:0016114
Cca03g01535 711 CDD TPP_DXS 109 357 IPR005477 GO:0008661|GO:0016114
Cca03g01535 711 Gene3D - 59 359 - -
Cca03g01535 711 Pfam Transketolase, C-terminal domain 568 691 IPR033248 -
Cca03g01535 711 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 70 697 IPR005477 GO:0008661|GO:0016114
Cca03g01535 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 65 450 IPR029061 -
Cca03g01535 711 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 10 710 IPR005477 GO:0008661|GO:0016114
Cca03g01535 711 Gene3D - 388 555 - -
Cca03g01535 711 SMART Transket_pyr_3 388 553 IPR005475 -
Cca03g01535 711 CDD TPP_PYR_DXS_TK_like 394 547 - -
Cca03g01535 711 Gene3D - 568 699 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01535 Cca-Chr3 34038811 34045520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01535 422 650 Acyl Lipid Metabolism Gene Families AT1G55510 25.610 7.66e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01535 K01662 - gmx:100793268 1277.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01535 03 34038811 34045520 Cca03g01535 03 34038811 34045520 ECH