Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01528 ATGCCTTCTCTGCCTCATAGTGGTAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGCACTGGAACCCTTACTTCGTCTTCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGATTCTTTTTTATCCCATGACGATACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGAGCAAGCTCAAGTAAAGTTGCCTGTTGCCATTTCTCTTCTGATGGGAAATTACTTGCAAGTGGTGGTCATGACAAAAAGGTTGTTTTATGGTATACGGATTCTCTAAAACAAAAAGCTACTCTTGAAGAACATTCATCTTTGATTACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCCTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCACTTCGCACCTTCACGGGACATTCTGCAAGTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTTATCTGCTCTTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGTAGTTGTGCTAGAGTCTCAAAGGGTGGCACCACCCATATGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCAGAGAACATTGTGTCTATATTTGATGTGGAGACGCAAGCGTGCCGATATTCATTAAAGGGACACACAAAAACGGTAGATTGTGTGTGTTGGGACCCTTCTGGGGAGTTGCTGGCATCAGTGAGTGAGGACTCTGTGAGGGTTTGGACTCTTGGATCTGGGAGTGAAGGGGAATGTGTACACGAACTTAGCTGCAATGGCAGTAAGTTTCATGCATGTGTTTTCCACCCGACGTACCCTTCATTGCTGGTCATTGGCTGTTACCAGGCAAGTTTTATTTTTTCATTGGAGCTGTGGAACATGAACGAGAACAAGACAATGACTCTGTCTGCTCATGATGGTCTTATTACTGCCTTGACTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCACGACAAGTACATCAAACTCTGGAAGTGA 1137 0.4354 MPSLPHSGSSSKPLMMFGTDGTGTLTSSSNQLWDDKDLELQDVDRFVEDGSLDENVDSFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASSSKVACCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTHMRFQPRLGRYLAAAAENIVSIFDVETQACRYSLKGHTKTVDCVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGSKFHACVFHPTYPSLLVIGCYQASFIFSLELWNMNENKTMTLSAHDGLITALTVSTVNGLVASASHDKYIKLWK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01528 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 89 130 IPR001680 GO:0005515
Cca03g01528 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 296 IPR001680 GO:0005515
Cca03g01528 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 131 166 IPR001680 GO:0005515
Cca03g01528 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 131 166 - -
Cca03g01528 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 346 378 - -
Cca03g01528 378 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 378 - -
Cca03g01528 378 SMART WD40_4 293 337 IPR001680 GO:0005515
Cca03g01528 378 SMART WD40_4 210 246 IPR001680 GO:0005515
Cca03g01528 378 SMART WD40_4 249 287 IPR001680 GO:0005515
Cca03g01528 378 SMART WD40_4 339 378 IPR001680 GO:0005515
Cca03g01528 378 SMART WD40_4 124 163 IPR001680 GO:0005515
Cca03g01528 378 SMART WD40_4 167 207 IPR001680 GO:0005515
Cca03g01528 378 SMART WD40_4 82 121 IPR001680 GO:0005515
Cca03g01528 378 Gene3D - 65 221 IPR015943 GO:0005515
Cca03g01528 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 346 378 IPR001680 GO:0005515
Cca03g01528 378 Gene3D - 222 378 IPR015943 GO:0005515
Cca03g01528 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 89 120 - -
Cca03g01528 378 ProSitePatterns Trp-Asp (WD) repeats signature. 150 164 IPR019775 -
Cca03g01528 378 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 216 IPR001680 GO:0005515
Cca03g01528 378 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 378 IPR044716 GO:0003714
Cca03g01528 378 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Cca03g01528 378 PRINTS G protein beta WD-40 repeat signature 365 378 IPR020472 -
Cca03g01528 378 PRINTS G protein beta WD-40 repeat signature 108 122 IPR020472 -
Cca03g01528 378 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 174 212 - -
Cca03g01528 378 CDD WD40 89 378 - -
Cca03g01528 378 Pfam WD domain, G-beta repeat 90 120 IPR001680 GO:0005515
Cca03g01528 378 Pfam WD domain, G-beta repeat 341 378 IPR001680 GO:0005515
Cca03g01528 378 Pfam WD domain, G-beta repeat 128 163 IPR001680 GO:0005515
Cca03g01528 378 Pfam WD domain, G-beta repeat 252 286 IPR001680 GO:0005515
Cca03g01528 378 Pfam WD domain, G-beta repeat 170 207 IPR001680 GO:0005515
Cca03g01528 378 SUPERFAMILY WD40 repeat-like 87 378 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01528 Cca-Chr3 33922298 33926283 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01528 168 377 Miscellaneous Gene Families AT5G08390 23.256 3.82e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01528 - - gmx:100816263 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01528 03 33922298 33926283 Cca03g01528 03 33922298 33926283 ECH