Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01517 ATGTCCAACAATCTGGTCTCAGAGCCAATACCGAGCATGCAGATGGCTCAGTTGGAGCCCCTTATGAACAAGGTTGATTCGTCAGGGAGACAGATGGAAATGGGGCTCTTGGGTCCTGTATCCAGTGATATTGTGTCACAGCCGCAGGCGACCTCGAATGAACATGTTGGACTATCGAGAGCTCTGCCTGGTGAACCTAGGTCCCAGGGCTTACCCCTTTCGAGCATGCAGAGTGGGCAAGTAGAAGCACAAGCAAGTAATCCGGGAATGCATCAAGTTCTTCCCCCCAATAAACAATCCATGCACATGGGGATGTTTCCGAATAGCTCAGGGCCGCAGCAGCAGCAGCTGACAGCTACTAAGCGCAAGGCACCGATAGAACTATCGTCCAATAGCTCCATGATGTTTAATAAGCGGGTTGCACAAATGGGAAATAGACCTTGGTTGCAGCAAGTACCTAATGCATCAAATAAAGGTTCTCCGCAGATTCAATCCCCATCAAATGCCTCCAGGGCACAGCATTCAGCAGCTTCTAATAAGAGAAAAACACAGATGGATAACACTTCCAGTAAATCTGGGACTCCTCGGTCCATGAATTCTAAAAGTCAGAATACGCAGATGAAACAATCCTCCAAGGTTCAAACTGAATCATCTGAAAGTGTTCGGTCCAAGATGAGAGAGTCTTTAGCTGCTGCTCTGGCCTTGGTTTCCAAGCAAGGTAAACCTCAAATTCCAAACAATAATACACCAAATGATGCTGCCAATACTCAGGGTAAATCAGGGAACAGCTCTCAATGTGCTGGATCAGTACCTGCATCTATGGATACTTCACTGGAGCAAAGGCAGGACATTTCTCAATCAGTTAATTCCTCTTTTGCTGAGGCTGATTCTGTTGGCTACGTGGTAGGAGAGCACAGTCAGAGTTCAACATTTAACGAACATTTTTCAGAAAAACATAAGGACTATGAAGCAGGAACCACAAATGCATCAAACAATGAAAACATTCTGAGTTCTATGCAAGATTTTCAGTCAAGTTACACTTTGACTACTGATGATGTTCCTTTCAGTGACAGTTTCTTTATGAAAGATGATCTTTTGCAGGGAAATGGTCTTTCCTGGGTATTATCTGATATGGTGGACATGGGAAATCAAAGGGAAAGTCAAACTAATGTAGAGCAGAGATCAGAACCTAACGAAACAGGTGGAGCTTGTAGGGAGGAGCCCCCTTTGCCTGAAATTTTAGCTTCACGAATTGAAGAAGAACTCTTTAAACTGTTTGGAGGTGTGAATAAGAAGTACAAAGAGAAAGGGAGGTCTCTTTTATTCAATTTAAAAGATCGCAATAATCCTGAACTTAGAGAAAGGGTTATGTTTGGTGAAATTCCTCCAGAACAATTATGTTCCATGACTGCAGAGGAACTTGCTTCAAAGGAGCTCTCTCAGTGGCGAATAGCCAAAGCGGAGGAGTTTGCTCAAATGGTGGTTTTACCTGATTCAGATGTTGATATTAGACGTTTGGTCAGGAAGACACACAaaggtgaatttcaagtggaagttgaacatgaagACAATGTCTCAATAGAGGAGGTTTCAGCTGCTCGAAGCCAAACAATAAAAAATGATGTGGAAGGCACTTCTCCTTCCAAAACTGATGTGAACACTGATGCTGAGAAGGGCAATTTACAGAAGGATAATACATTTTCCATTACCATTTCTTCCAACGATGGGACTGATCCCATGCAAGGGCTAATGACAGATGATGCATTGAAGGACCCTGACTTTCTTCCACCAATTGTCTCTCTTGATGAATTTATGGAATCTCTTCATTCGGAGCCACCATTTGAAAATTTACCGGTAGAATCTGGGAAAGTGACACCTACCTCAGATAAGGTTGATTCTGGGATTGGATCTAAATCAAAATCTTCCGATTTAACTCCAAATGAGCAAGCGGATGTTACTCCTGATAATCCTGAGAAGTTTCAAAGCCCACGTGTAAATTCAGATGCTGAAGAAGATAAAAAGTTTAATGCTGAACCTGGGGCCATTTCTTCTGATACGAGATACAGTGAGAGTCAGGCTGACAGGAAGTCAACTGATGGTCGTAACAAGGAAAGGACAAGTGATGATGTGAAGTCTGCTTCCAGCGATGCTGAGTTGAGAGGCAATCAGTTTCATGCAGAAGAGAGATATGGTAATAATAATAGGCATTTGAAGGTTGCAGTCCCTGCTAAGGGTGAATGCCTCTGGGAGGGAATGCTTCAACCGAATATCTCCACCACTCAATCAGTCATAAGCATCTTTAAGAGTGGTGAGAAAACTGCTGCTAAAGACTGGCCTGGGTTTCTTGAGATCAAGGGAAGGGTTCGACTTGATGCATTTGAGAAATTTCTGCAAGACCTTCGACAGTCCAGAAGTCGTGCAATCATGGTTTCACATTTCGTTCCTAAAGAGCCGGACGAGCAATCAACTCTTCGTGAGGTGGCTGACTCGTACATTATGGACGACAGAGTAGGATTCGCTGAGCCTGTGCATGGAGTTGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATGCTCAGCAACATACTTCCAAAGGAACAAATTGAGGCAGTTAATTCTATTGATAATGGCCTAATTGGTATTATTGTATGGAGAAAAACTAATTTAACTTCGTCTATATCACCCACCACTGCATCACACCACAAACATAGCTCTAAAAGACAATACTTCAGTAGGAGACCGCTAGATATAAATGTGAATACCAATTCCAATTCCACCCACATAGCAGTTAAGACCACCGAGAatgatgatgatgatgatgTTCCTCCTGGATTTGGGCCGCCAGCAGCCCGAGTCGAGGATGATCTCCCAGAGTTTAATTTCTCTGGTGGTTCGAAACCGTCACACTTGGTTCAAAAACCAATGGGGTCACCTGGTATGGTCCCATTGCACTCGGTTAACCAGGCCCCACCACGCCCTGTTGAGCAAATGAGAGAACTTGTACACAAATATGGGCAAACCAAACCAAGTGTACCTTCAGCAAACTGGCAGGATAAATTTGGGGGAACAATTCAACCCTGGAATGACGATGATGATGACATACCTGAATGGCAGCCCCAAAACCAAACCCAAACCCCCCAGAATCAGTTTCCTCCCCAACAGACAATGCACAACTTTCATCTTCGACCTCACATTTTGAATCAATCATTTCCGGGTTCACCACAACATCCAATTATGCCAACACAATATCTGCAACCCCCTATGAATGTGACACAAGGCCAACGAAGTTTTGACCCACAGTGGGTTCCCTCTCCCCAGGGTAGCAACCTACAGCCAAGAGGTGGACCACCATATGGAGCGCCTGCGCAAGGCACTACCTGGCCTCAACATTCGTCTAGAAGTAGGGGATACTAG 3420 0.436 MSNNLVSEPIPSMQMAQLEPLMNKVDSSGRQMEMGLLGPVSSDIVSQPQATSNEHVGLSRALPGEPRSQGLPLSSMQSGQVEAQASNPGMHQVLPPNKQSMHMGMFPNSSGPQQQQLTATKRKAPIELSSNSSMMFNKRVAQMGNRPWLQQVPNASNKGSPQIQSPSNASRAQHSAASNKRKTQMDNTSSKSGTPRSMNSKSQNTQMKQSSKVQTESSESVRSKMRESLAAALALVSKQGKPQIPNNNTPNDAANTQGKSGNSSQCAGSVPASMDTSLEQRQDISQSVNSSFAEADSVGYVVGEHSQSSTFNEHFSEKHKDYEAGTTNASNNENILSSMQDFQSSYTLTTDDVPFSDSFFMKDDLLQGNGLSWVLSDMVDMGNQRESQTNVEQRSEPNETGGACREEPPLPEILASRIEEELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGEIPPEQLCSMTAEELASKELSQWRIAKAEEFAQMVVLPDSDVDIRRLVRKTHKGEFQVEVEHEDNVSIEEVSAARSQTIKNDVEGTSPSKTDVNTDAEKGNLQKDNTFSITISSNDGTDPMQGLMTDDALKDPDFLPPIVSLDEFMESLHSEPPFENLPVESGKVTPTSDKVDSGIGSKSKSSDLTPNEQADVTPDNPEKFQSPRVNSDAEEDKKFNAEPGAISSDTRYSESQADRKSTDGRNKERTSDDVKSASSDAELRGNQFHAEERYGNNNRHLKVAVPAKGECLWEGMLQPNISTTQSVISIFKSGEKTAAKDWPGFLEIKGRVRLDAFEKFLQDLRQSRSRAIMVSHFVPKEPDEQSTLREVADSYIMDDRVGFAEPVHGVELYFCPPHKKTVEMLSNILPKEQIEAVNSIDNGLIGIIVWRKTNLTSSISPTTASHHKHSSKRQYFSRRPLDINVNTNSNSTHIAVKTTENDDDDDVPPGFGPPAARVEDDLPEFNFSGGSKPSHLVQKPMGSPGMVPLHSVNQAPPRPVEQMRELVHKYGQTKPSVPSANWQDKFGGTIQPWNDDDDDIPEWQPQNQTQTPQNQFPPQQTMHNFHLRPHILNQSFPGSPQHPIMPTQYLQPPMNVTQGQRSFDPQWVPSPQGSNLQPRGGPPYGAPAQGTTWPQHSSRSRGY 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01517 1139 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 31 1119 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 1 131 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 621 663 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 384 407 - -
Cca03g01517 1139 Pfam SPOC domain 744 886 IPR012921 -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 534 580 - -
Cca03g01517 1139 ProSiteProfiles TFIIS central domain profile. 384 502 IPR003618 GO:0006351
Cca03g01517 1139 MobiDBLite consensus disorder prediction 150 225 - -
Cca03g01517 1139 Pfam Transcription factor S-II (TFIIS), central domain 399 489 IPR003618 GO:0006351
Cca03g01517 1139 SUPERFAMILY Elongation factor TFIIS domain 2 410 478 IPR036575 GO:0006351
Cca03g01517 1139 MobiDBLite consensus disorder prediction 611 729 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 42 56 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 664 678 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 240 285 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 1010 1024 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 1039 1113 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 239 285 - -
Cca03g01517 1139 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 31 1119 - -
Cca03g01517 1139 Gene3D - 386 477 IPR036575 GO:0006351
Cca03g01517 1139 SMART mid_6 383 485 IPR003618 GO:0006351
Cca03g01517 1139 MobiDBLite consensus disorder prediction 70 94 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 150 218 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 1009 1139 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 689 729 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 102 131 - -
Cca03g01517 1139 MobiDBLite consensus disorder prediction 534 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01517 Cca-Chr3 33804177 33810737 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01517 - - gmx:100808809 1842.4