Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01497 ATGCCTCTTGGAGAAAGGCAGAGTGACAAGAGCGAGTCTCGCTACTGCGGTGTAGAGACACAGTTCAACGATGACATGCCACGTGTCCTCGATTTCAACCTCTATTCCGGAGCCTTCGATTTCGTTGTTGCTCCTCTGATGGATCCTTCTTATCGGCCAAGTTTAGTGCAAAAGGATGGTTTGGGGTCTGGTGTTCTGCCATTTGCTGGGTCAGACTTGGTCTTGAGTCCATCCCAATGGAGTAGTCATGTAGTGGGAAAAATTAGCTCATGGATTGATTTGGATTCGGAAGATGAAACCCTAAGGATAGATTCTGAGACCACACTTAAACAAGAAATAGCTTGGGCTTCTCATCTCTCTTTACAGGCCTGCCTGCTTCCTGCCCCCAAGGGAACTTCCTGTGCTAATTATGCTAGATGTGTGAATCAGATCTTACAAGGCTCAAGTAATATGCAGTTATGGCTTAGGATTCCATTGGTGAAGGCTGATGATGAATCTATGGATGCAAAATCTGTTGGTTTGGTTGATTCATGGGAAACTTGGAATTCATTTCGTCTGCTGTGTGAGCATCATAGTCAACTGTCAGTTGCACTTGATATTCTGAGTACTCTTCCTTCTGCAAATTCACTAGGACGTTGGTTTGGGGAGTCTGTTAGAGCAGCTATATTGAATACTGACTGCTTTCTAACTAATTCTCATGGCTGTCCATGCCTCTCTAAGCGCCACCAGAGGCTAATTACCGGGTTTTTTAACCATTCTATTCAGATCATTATATCTGGAAATTCAGTTCATCCTAAAACAAGTGTGGATGAAAAAACAGTTCATGATAATTCGGTTACAGATTCACAAAGACACCCCTTGCGACCTTATTTAGACTATGTTGGATATCTATACCAAAAAATGGATCCTCTTCCTGAGCAAGAACGTTTTGAGCTTGGTTACAGGGATTTTTTACAGTCACCCTTGCAACCTTTAATGGATAACCTAGAGGCTCAGACGTACGAGACTTTTGAGAGAGATGCAGTGAAATACATTCAGTACCAAAGAGCAGTTAGTAAAGCATTATTGGACAGGGTTCCTGATGAAGAGGCATCTGATAAAACCATTGTATTGATGGTTGTTGGGGCAGGTCGTGGTCCTCTTGTACGGGCATCGTTACAGGCTGCTGAAGAAACTGGGCGGAAACTCAAAGTTTATGCCGTTGAAAAGAATCCAAATGCAGTTGTTACCCTACATGCATTACTCAAATTAGAAGGATGGGAGGATACTGTCACTGTAGTCTCAAGTGACATGCGATGTTGGAATGCCCCTGAAAAAGCTGACATATTGGTTAGTGAATTGTTAGGTTCCTTTGGCGACAATGAACTGTCTCCTGAGTGCCTTGATGGAGCCCAGAGGTTTCTAAAGCAAGATGGAATTTCGATACCATCTTCGTACACCAGTTTCCTCCAACCAGTGACAGCTTCAAAGTTATATAATGATGTTAAGGCGCATAAAGACCTTGTACATTTTGAAACTGCATATGTTGTAAAAATACACAATGTTGCCAGACTTGCACCAACTCAACCTGTTTTTACATTTACTCATCCAAAGTGCTCTGATAAACAAACCAATCACCGCTATAAAAAGTTGAATTTTGTGATACCTGATGACACTGGGTCAGCTATGGTACATGGATTCGCTGGTTACTTTGATGCAACTCTTTACAAGGATGTGCATCTTGGAATTGAACCTTCAACAGCAACACCGAACATGTTCAGTTGGTTTGCAATATTTTTCCCATTAAGGAAACCCATTTGTGTGAATCCTGGTTCTTCACTTGAAGTACATTTCTGGCGGTGTTGTGGTTCTACAAAGGTTTGGTATGAGTGGTGTGTTGCTTCTCCCTCGTCGTCCCCAATTCACAACAGTAATGGACGTTCTTACTGGGTTGGGCTCTAG 1941 0.4261 MPLGERQSDKSESRYCGVETQFNDDMPRVLDFNLYSGAFDFVVAPLMDPSYRPSLVQKDGLGSGVLPFAGSDLVLSPSQWSSHVVGKISSWIDLDSEDETLRIDSETTLKQEIAWASHLSLQACLLPAPKGTSCANYARCVNQILQGSSNMQLWLRIPLVKADDESMDAKSVGLVDSWETWNSFRLLCEHHSQLSVALDILSTLPSANSLGRWFGESVRAAILNTDCFLTNSHGCPCLSKRHQRLITGFFNHSIQIIISGNSVHPKTSVDEKTVHDNSVTDSQRHPLRPYLDYVGYLYQKMDPLPEQERFELGYRDFLQSPLQPLMDNLEAQTYETFERDAVKYIQYQRAVSKALLDRVPDEEASDKTIVLMVVGAGRGPLVRASLQAAEETGRKLKVYAVEKNPNAVVTLHALLKLEGWEDTVTVVSSDMRCWNAPEKADILVSELLGSFGDNELSPECLDGAQRFLKQDGISIPSSYTSFLQPVTASKLYNDVKAHKDLVHFETAYVVKIHNVARLAPTQPVFTFTHPKCSDKQTNHRYKKLNFVIPDDTGSAMVHGFAGYFDATLYKDVHLGIEPSTATPNMFSWFAIFFPLRKPICVNPGSSLEVHFWRCCGSTKVWYEWCVASPSSSPIHNSNGRSYWVGL 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01497 646 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 318 624 IPR025799 GO:0016274|GO:0018216
Cca03g01497 646 Gene3D - 14 307 - -
Cca03g01497 646 Pfam PRMT5 oligomerisation domain 478 644 IPR035248 -
Cca03g01497 646 Gene3D Vaccinia Virus protein VP39 310 477 IPR029063 -
Cca03g01497 646 Gene3D - 478 646 - -
Cca03g01497 646 Pfam PRMT5 arginine-N-methyltransferase 306 475 IPR035075 -
Cca03g01497 646 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 5 1 646 IPR025799 GO:0016274|GO:0018216
Cca03g01497 646 Pfam PRMT5 TIM barrel domain 39 300 IPR035247 -
Cca03g01497 646 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 1 646 - -
Cca03g01497 646 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 333 645 IPR029063 -
Cca03g01497 646 PIRSF PRMT5 3 646 IPR007857 GO:0006479|GO:0008168|GO:0035246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01497 Cca-Chr3 33557123 33567616 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01497 K02516 - gmx:100782245 1234.94