Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01495 ATGAGTAGACCAACAACAAGAAGTAAAAATAAAAGACAGAGGCAAGGGGATGATGGCACTGGCACTGGTGAAATATGGAGGAAAATTTACAATACAGGTACAATAACTGAGGATGACATGAATCAACTATATATGATTTGGAAGCCAGTTTGTTCAGGCTGTCGAGTCAATACCAAAGATAATCCAAATTGCTTCTGTGCATTAGTTCCACCTCCAAATGGAGCCCGAAAGTCTGGCTTATGGCAAAAGATGTCAGATTTTGTTGAAACTCTTGGCCATGACCCAACCAAGGATCTTCGTGCATCTGCTAATTCTCCTGCAGGTCTCACAAATCTTGGTGCAACATGCTATGCTAACAGCATTCTCCAGTGCTTGTACATGAATGAATCTTTCCGAGAAGGCATATTTTCTGTAGAACGAGATGTTCTACAACAACAGCCTGTGCTAGATCAGCTGGCTCGACTTTTTGTGCAGTTGCATATTAGCAAAATGGCTTTCATAGATTCTTCTCCATTTGTAAAAACACTGGAATTAGATAATGGAGTTCAGCAGGATAGCCATGAATTTCTGACATTGCTTCTCTCTTTGCTTGAGCGTTGTCTGAGCCATTCCAAAGTTCTCAAGACAAGAACAATAGTTCAAGATCTTTTCCGGGGAAGTGTGTCTCATGTGACGACGTGCTCACGATGTGGAAGAGACTCTGAAGCTTCTTCCAAAATGGAAGATTTCTATGAATTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGATGAAAGCCTCGATGAATATCTCACTGTTGAAGAGCTTAATGGTGACAATCAATATTTTTGTGAGTCATGTAAAACAAGAGTTGATGCTACACGTAGCATCAAGCTATGTACATTACCCAAAGTACTTAATTTTCAGCTTAAGCGTTATGTCTTCCTTCCAAAGACTACAACAAAGAAGAAAATTACTTCCGCCTTTTCATTTCCCGCTGAACTTGATATGCGGTATAGAATGTCTGAGTTGTCTCAGTTCGACTTGGTATATGACTTGTCAGCTGTACTGATTCACAAGGGAACTGGTGCTAATAGTGGCCATTACATTGCTCACATCAAGGATGTGAACACTGGGCAATGGTGGGAATTTGACGATGAGCACGTTACTAATTTGGGTTGCCATCCATTTGGTGAAGGCTCTTCAAGTTCTACTAAATCCATCAAGACTGATGCAATTCATTCTGATAGTTCTGAAACAATGAAAGCTGTCAGTAATGGAAATGGTTTTAATGCCACTCATTCACAATCTTCGCTTGTGGAGACATTTTTGTCTAGTGATGCGTACATGTTGATGTACCATCTTAAACATGCAAAAAATGTAGGTGAAAGTGGAGGAGGAATTTGTGGTGTTGACCATAAAGAAACAGAGGGTGTTGCTTTGCAAAATGGTGCTCCTCTTCCATCTCATCTTTATGATGAGATTCAAAATTTCAATACCTCATATAATGATGCTTGTCAGCAGTACAATAACAGGAAAGAGTTAGAATTGAGCCGTATTACCGAGAGGAGACAGGAAGTACGATCTATTTTAGCTGAGGCTCCTGTTCAACCATTGGAGCAACCATTTTATTGGATTTCTAGTGAATGGCTTCGCCAGTGGGCCGACAACATTATTCCAACTCCTCTTGACAACACACCAGTCCAATGCTCGCATGGGAAAGTCCCAGTTTCAAAGGTTACCTCTATGAAGCGATTGTCTACTAAGGCGTGGAATGCGTTGTTCTCCAAGTATGGTGGGGGGCCGGCATTGTCTAATGATAACAACTGCTGGGATTGCCTGATTCACGGGGCTATGACAGTGGTGTCAGCTGACACCTATCGAGATAGAAGAGAATCGATGAAGTCACTTGCGCGAGATATTTTAGATGGAAACTGTCTAGAAGGGAAGTATTACATATCCAGACCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCATCAGACGCTGATGCTGGACCAACAGCAGCCATTAGTTGTCCACATGGTCAATTGATGCCTGAGCAAGCTCCTGGTGCTAAGCGGGTGCTTATTCCTGAGAGCTTTTGGCTCTTCTTACATGAAGATGCTGTTTCTGTAAAGCCTGATGATCCTTTAGGTGGCCCAACTTTTTCTTCAGATTCTGAAGAGTGTTCCCAATGCAGTAATGAATTATCTCAAGTAGCATGCTTGGAAGACTCCTTGAGATTAGTTAAACAAAGGCAACGTCAGAATCATGAGAAATTATTCCAGGCTAAAAGTATGCCACTTTCTCTGCATTGCAAGTATTTTCTGGTGCCTTCTTCATGGGTTTCAAAATGGAGAAATTACATTACTCCAACCCTGAAGAATTCAGATAAACCAGAAACTTTAGATGGGGTAATTGATTCACTGCTGTGTGAAAAGCACTCGCAGCTTGTTGAAAGACCTCCTGATTTGGTTTTCAGACGTGGTGCTATAATCCAGAGGGAGTCTTCTGCAGGTGGCTTAACCATTGTAACTGAGAATGATTGGAAATGCTTCTGTGAAGAATGGGGAGGTATTGAGACCAAAGGAATATCTGCAACAATTGATAATGTTAATGATTCAGAGAATGTTTTGACTGGATCCAGTGAAGAGATGCTAATATGCAAGGATCAGCTGGGCACTGTGGATAAGATGAATAATGAAAATGGATCTGGACAAATTTTAATTAAGACTTGTCCTGAGGTTTGTGAAAGTTGCATTGGAGAAAGAGAGAGCTGTGAGCTAATGCAGAAACTTAACTATTGCAACGAGGACATATTTGTAATACTTGTTCGTGGTAAGGAGGTACCTAGATCAATATTGGAGGCTTCAAAAGGATTCATCGAAACAGATCGGCGAGTTTCCAAACGTTCCCGCAAGACTAAAAATGGGAGTTCAATTAGTCTAAAAGTTTCTGCTTCAACATCTTTGTATCAGCTGAAAATGATGATATGGGAATCCTTTGGGGTTGTTAAGGAAAACCAGATACTACATAAAGGTGATAGGATAATTGATAGCGAGAATGAATGTGCTACCCTCGCGGATGTGAACATATTTGCTGGAGATCAGATTATAGTGAGAGACTCTGAGATCCATGAAAATCGAGATATTGCTGATGAGCTTTGCGATGATAAAATGGATCTGCAGCATACTGAGGAAGGGTTCCGTGGAACACTTCTCACAGCGAATGTTTCATCCCAGGTTGTTTAA 3243 0.411 MSRPTTRSKNKRQRQGDDGTGTGEIWRKIYNTGTITEDDMNQLYMIWKPVCSGCRVNTKDNPNCFCALVPPPNGARKSGLWQKMSDFVETLGHDPTKDLRASANSPAGLTNLGATCYANSILQCLYMNESFREGIFSVERDVLQQQPVLDQLARLFVQLHISKMAFIDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLSHSKVLKTRTIVQDLFRGSVSHVTTCSRCGRDSEASSKMEDFYELELNVKGLKSLDESLDEYLTVEELNGDNQYFCESCKTRVDATRSIKLCTLPKVLNFQLKRYVFLPKTTTKKKITSAFSFPAELDMRYRMSELSQFDLVYDLSAVLIHKGTGANSGHYIAHIKDVNTGQWWEFDDEHVTNLGCHPFGEGSSSSTKSIKTDAIHSDSSETMKAVSNGNGFNATHSQSSLVETFLSSDAYMLMYHLKHAKNVGESGGGICGVDHKETEGVALQNGAPLPSHLYDEIQNFNTSYNDACQQYNNRKELELSRITERRQEVRSILAEAPVQPLEQPFYWISSEWLRQWADNIIPTPLDNTPVQCSHGKVPVSKVTSMKRLSTKAWNALFSKYGGGPALSNDNNCWDCLIHGAMTVVSADTYRDRRESMKSLARDILDGNCLEGKYYISRPWLQQWWKRKVLDAPSDADAGPTAAISCPHGQLMPEQAPGAKRVLIPESFWLFLHEDAVSVKPDDPLGGPTFSSDSEECSQCSNELSQVACLEDSLRLVKQRQRQNHEKLFQAKSMPLSLHCKYFLVPSSWVSKWRNYITPTLKNSDKPETLDGVIDSLLCEKHSQLVERPPDLVFRRGAIIQRESSAGGLTIVTENDWKCFCEEWGGIETKGISATIDNVNDSENVLTGSSEEMLICKDQLGTVDKMNNENGSGQILIKTCPEVCESCIGERESCELMQKLNYCNEDIFVILVRGKEVPRSILEASKGFIETDRRVSKRSRKTKNGSSISLKVSASTSLYQLKMMIWESFGVVKENQILHKGDRIIDSENECATLADVNIFAGDQIIVRDSEIHENRDIADELCDDKMDLQHTEEGFRGTLLTANVSSQVV 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01495 1080 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 449 IPR028889 -
Cca03g01495 1080 ProSiteProfiles DUSP domain profile. 511 603 IPR006615 GO:0004843
Cca03g01495 1080 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Cca03g01495 1080 SUPERFAMILY DUSP-like 513 598 IPR035927 -
Cca03g01495 1080 CDD Peptidase_C19L 108 446 IPR033841 GO:0004843
Cca03g01495 1080 Gene3D - 742 862 IPR035927 -
Cca03g01495 1080 ProSiteProfiles Ubiquitin domain profile. 971 1037 IPR000626 GO:0005515
Cca03g01495 1080 SMART dusp 529 600 IPR006615 GO:0004843
Cca03g01495 1080 CDD Ubl_USP48 970 1071 IPR044743 GO:0004197|GO:0004843|GO:0016579
Cca03g01495 1080 MobiDBLite consensus disorder prediction 1 23 - -
Cca03g01495 1080 SUPERFAMILY Ubiquitin-like 971 1038 IPR029071 -
Cca03g01495 1080 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 108 123 IPR018200 GO:0004843|GO:0006511
Cca03g01495 1080 ProSiteProfiles DUSP domain profile. 618 725 IPR006615 GO:0004843
Cca03g01495 1080 Gene3D Cysteine proteinases 90 449 - -
Cca03g01495 1080 Pfam Ubiquitin carboxyl-terminal hydrolase 108 446 IPR001394 GO:0004843|GO:0016579
Cca03g01495 1080 Gene3D - 969 1040 - -
Cca03g01495 1080 SUPERFAMILY Cysteine proteinases 105 449 IPR038765 -
Cca03g01495 1080 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1050 - -
Cca03g01495 1080 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1050 - -
Cca03g01495 1080 Gene3D - 502 601 IPR035927 -
Cca03g01495 1080 ProSiteProfiles DUSP domain profile. 746 866 IPR006615 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01495 Cca-Chr3 33530751 33542351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01495 105 438 Miscellaneous Gene Families AT2G24640 28.418 1.07e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01495 - K11858 gmx:100815770 2019.97